View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13387_low_3 (Length: 378)
Name: NF13387_low_3
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 11227276 - 11227519
Alignment:
| Q |
20 |
catagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatgtcaatgaagaagaacaagaacctgatgagccagagccaaatcttgat |
119 |
Q |
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| T |
11227276 |
catagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatatcaatgaagaagaacaagaacctgatgagccagagccaaatcttgat |
11227375 |
T |
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| Q |
120 |
gaatatcataataactacagtgatgaagatgataatttcatgttagagtagtttaattatatgaacattttgtgcttttctgataagctataagtcatag |
219 |
Q |
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| T |
11227376 |
gaatatcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgcttttctaataagctataagtcatag |
11227475 |
T |
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| Q |
220 |
tttattgtgcttttcaactcaattaagttttatgaactttgtac |
263 |
Q |
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| T |
11227476 |
tttattgttcttttcaactcaattaaggtttatgaactttgtac |
11227519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 10128065 - 10128187
Alignment:
| Q |
141 |
gatgaagatgataatttcatgttagagtagtttaattatatgaacattttgtgcttttctgataagctataagtcatag--tttattgtgcttttcaact |
238 |
Q |
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| T |
10128065 |
gatgaacatgataatttaatgttagtg--gtttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaact |
10128162 |
T |
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| Q |
239 |
caattaagttttatgaactttgtac |
263 |
Q |
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| T |
10128163 |
caattaatgtttatgaactttgtac |
10128187 |
T |
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