View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13387_low_8 (Length: 235)
Name: NF13387_low_8
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24138805 - 24138575
Alignment:
| Q |
1 |
ataccttcactat--tttgaggggtgctatactattcatttgaaaatatgttgaattaacaacttaatttgatgtttttgttaggagggattgaactcat |
98 |
Q |
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| T |
24138805 |
ataccttcactatattttgagtggtgctatactatt---ttgaaaatatgttgaattaacaacttaatttgatgtttttgttaggagggattgaactcat |
24138709 |
T |
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| Q |
99 |
atagggaagattcacaagttcaagaggaaggaaattataatacaggaatcgatcttaacaaattccctgtagctgagttcgttgattcgagaaatgaaac |
198 |
Q |
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||||||||||||||||||||||||||| |||||||| | || ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
24138708 |
atagggaagattcacaagttcaagagggaggaaattctcattcaggaattgatcttaacaaattccctgtagctgagttcgatgattcaagaaatgaaac |
24138609 |
T |
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| Q |
199 |
aaattccattctgtatgacatcctttatttattt |
232 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24138608 |
aaatatcattctgtatgacatcctttatttattt |
24138575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 19759032 - 19758957
Alignment:
| Q |
9 |
actattttgaggggtgctatactattcatttgaaaatatgttgaattaacaacttaatttgatgtttttgttagga |
84 |
Q |
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|||||| |||| |||| | |||||||||||||||||||||||||||| | |||| |||| |||||||| |||||| |
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| T |
19759032 |
actattatgagtggtgttttactattcatttgaaaatatgttgaattcaacacttgatttaatgtttttattagga |
19758957 |
T |
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