View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13387_low_9 (Length: 234)
Name: NF13387_low_9
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5923950 - 5923737
Alignment:
| Q |
1 |
ctgttagtgctggtgctgctattcccgtttctactggtctttatattaacgccaattcccctggttctccttctggatccgatgtgagcgagtccagcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5923950 |
ctgttagtgctggtgctgctattcccgtttctactggtctttatattaacgccaattctcctggttctccttctggatccgatgtaagcgagtccagcgt |
5923851 |
T |
|
| Q |
101 |
acctattgtgaacactcatgtaaactctcatgtttaccgacccgtgccaacgagaaccgtcgcgcctctaccactcgtagaaacgacgtcgccttcgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5923850 |
acctattgtgaacactcatgtaaactctcatgtttaccgacccgtgccaacgagaaccgtcgcgcctctaccactcgtagaaacgacgtcgccttcgaat |
5923751 |
T |
|
| Q |
201 |
tcgaatgagcctcc |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5923750 |
tcgaatgatcctcc |
5923737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University