View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13388_low_1 (Length: 449)
Name: NF13388_low_1
Description: NF13388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13388_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 2800687 - 2801116
Alignment:
| Q |
1 |
acggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatttgctctggctagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800687 |
acggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatttgctctggctagat |
2800786 |
T |
|
| Q |
101 |
ctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgtttatcgaatttgctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800787 |
ctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgtttatcgaatttgctaa |
2800886 |
T |
|
| Q |
201 |
attttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaattttatgatattctaatgtag |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800887 |
attgtattagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaattttatgatattctaatgtag |
2800986 |
T |
|
| Q |
301 |
catcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttatctcacaaccagtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2800987 |
catcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttatgtcacaaccagtaa |
2801086 |
T |
|
| Q |
401 |
ccaaataaccactatcagaatgttggaaag |
430 |
Q |
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| T |
2801087 |
ccaaataaccactataagaatgttggaaag |
2801116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 1680041 - 1679612
Alignment:
| Q |
1 |
acggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatttgctctggctagat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680041 |
acggttgatgttaaggaagcagatggtggcgataaagatagcagcaaagaatgaagaggtaattttctgatatttttaggataatttgctctggctagat |
1679942 |
T |
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| Q |
101 |
ctgtaacaatagattaaggcctactggttaggaattttgataacatatattaatatgttcaatctgtgtgtattctgtttatgtttatcgaatttgctaa |
200 |
Q |
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| T |
1679941 |
ctgtaacaatagattaaggcctactggttaggaatttagataacatatattaatatgttcaatctgtgtgtattctgtttatgtttatcgaatttgctaa |
1679842 |
T |
|
| Q |
201 |
attttattagtaaatgacatggataataatttaaatcaatttctaatgatagttatttggtagtatgttccaagagaaattttatgatattctaatgtag |
300 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679841 |
attgtataagtaaatgacatggataataatttaaatcaatttctaatgatagttatgtggtagtatgttccaagagaaattttatgatattctaatgtag |
1679742 |
T |
|
| Q |
301 |
catcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttatctcacaaccagtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1679741 |
catcctttcttacaatttataagctgaatgtttgttattgtttctaccccatctgtttctacatctagatttcattaactgtttatatcacaaccagtaa |
1679642 |
T |
|
| Q |
401 |
ccaaataaccactatcagaatgttggaaag |
430 |
Q |
| |
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||||||||||||||| |||||||||||||| |
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| T |
1679641 |
ccaaataaccactataagaatgttggaaag |
1679612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 2802666 - 2802715
Alignment:
| Q |
350 |
catctgtttctacatctagatttcattaactgtttatctcacaaccagta |
399 |
Q |
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| T |
2802666 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
2802715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 1659058 - 1659017
Alignment:
| Q |
213 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
254 |
Q |
| |
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||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
1659058 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
1659017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 2802556 - 2802597
Alignment:
| Q |
213 |
aatgacatggataataatttaaatcaatttctaatgatagtt |
254 |
Q |
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| T |
2802556 |
aatgacacggataatagtttaaatcaatttctgatgatagtt |
2802597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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