View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13389_high_1 (Length: 945)

Name: NF13389_high_1
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13389_high_1
NF13389_high_1
[»] chr3 (22 HSPs)
chr3 (475-928)||(7747393-7747846)
chr3 (475-928)||(6725678-6726138)
chr3 (535-918)||(6858496-6858888)
chr3 (22-390)||(6725153-6725534)
chr3 (620-928)||(6412534-6412842)
chr3 (73-390)||(6594494-6594818)
chr3 (216-391)||(6852385-6852557)
chr3 (22-170)||(6852237-6852386)
chr3 (808-918)||(8572570-8572680)
chr3 (392-565)||(6594858-6595017)
chr3 (17-125)||(6879297-6879406)
chr3 (392-540)||(6412340-6412489)
chr3 (803-928)||(6595165-6595290)
chr3 (22-253)||(6234686-6234927)
chr3 (391-455)||(6852607-6852671)
chr3 (198-288)||(6412113-6412203)
chr3 (392-434)||(6725611-6725653)
chr3 (192-256)||(6165524-6165586)
chr3 (28-116)||(6411718-6411807)
chr3 (22-138)||(6255599-6255723)
chr3 (305-388)||(6412201-6412285)
chr3 (99-169)||(6412002-6412072)
[»] scaffold0425 (2 HSPs)
scaffold0425 (216-874)||(14818-15479)
scaffold0425 (22-170)||(14670-14819)
[»] chr8 (1 HSPs)
chr8 (184-258)||(42151817-42151886)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 475 - 928
Target Start/End: Complemental strand, 7747846 - 7747393
Alignment:
Q  475 gaacagaaaacagcatgggatatatattcaatattagatagcaagtatgagtactctttgtatgcaccttttaattaaccaattccatacacgtcgtatt 574  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7747846 gaacagaaaacagcatggacaatatattcaatattagatagcaagtatgagtactctttgtatgcaccttttaattaaccaattccatacacatcgtatt 7747747  T
Q  575 cttcaactaacatgcaatatatttatgaaactaagaacagtgacatattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgattt 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  7747746 cttcaactaacatgcaatatatttatgaaactaagaacagtgacatattttcaaatttcaacaaaggtgggagctaaacgttattgaacggaaatgattt 7747647  T
Q  675 gatattaacattaacaacaatacaagaaggttatannnnnnnacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtg 774  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7747646 gatattaacattaacaacaatacaagaaggttatatttttttacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtg 7747547  T
Q  775 actttcatgttccagcaagtatatcaagaatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatca 874  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  7747546 actttcatattccagcaagtatatcaagaatcgtgtcctaaatttcggggccgatagagaaaagagtgatctatcactctagcagacaagcaaacaatca 7747447  T
Q  875 gttttttcgttaaacttgtatttacgactatatcaatgcaataggttagttgct 928  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7747446 gtttcttcgttaaacttgtatttacgactatatcaatgcaatagattagttgct 7747393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 475 - 928
Target Start/End: Original strand, 6725678 - 6726138
Alignment:
Q  475 gaacagaaaacagcatgggatatatattcaatattagatagcaagtatgagtactctttgtatgcaccttttaattaaccaattccatacacgtcgtatt 574  Q
    ||||||||||| |||||  | |||||||||||||||||| |||||||||||||  | ||| |||||  ||||||||||||||||||||||| ||||        
T  6725678 gaacagaaaaccgcatgaca-atatattcaatattagatggcaagtatgagtataccttgcatgcatattttaattaaccaattccatacatgtcgg--- 6725773  T
Q  575 cttcaactaacatgcaatatatttatgaaactaagaacagtgacat-----------attttcaaatttcaacaaaggtaggagctaaaagatatcgaac 663  Q
    ||||||||| |||||||| ||| |||||||||| || |||||||||           ||||||| |||||||||||||| |||||||||| |||| | ||    
T  6725774 cttcaactagcatgcaatgtatctatgaaactatgagcagtgacattttagacatttattttcatatttcaacaaaggtgggagctaaaaaatattgtac 6725873  T
Q  664 ggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnacttctttgaaacactttgaaaatccagtaaacgaagacataaaatc 763  Q
     ||||||| ||||||| ||||||||||||||| |||||||| |||        |||||||||||||||||||||||||||  |||| || ||||||||||    
T  6725874 agaaatgaattgatatgaacattaacaacaattcaagaaggatatgttgttttacttctttgaaacactttgaaaatccaaaaaacaaaaacataaaatc 6725973  T
Q  764 ttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaa 863  Q
    ||||||| | ||   |||  ||||| || |||||| || |||| |||||| ||||||| ||||||||||||||| |||| ||| ||| || | |||||||    
T  6725974 ttctaatggcgatcctcaaattccaccatgtatatgaataatcatctcctaaatttccaggccgatacagaaaacagtggtctgtcattccaacagacaa 6726073  T
Q  864 gaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaataggttagttgct 928  Q
    | |||||||||  || ||| ||||||||||| ||  |||||||||  |||||||| |||||||||    
T  6726074 gcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaatagattagttgct 6726138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 535 - 918
Target Start/End: Original strand, 6858496 - 6858888
Alignment:
Q  535 tatgcaccttttaattaaccaattccatacacgtcgtattcttcaactaacatgcaatatatttatgaaactaagaacagtgacat---------atttt 625  Q
    |||||||||||||||||||||||| |||||| ||| | | ||||||||| |||||| ||||||||||||||||||| || | ||||         |||||    
T  6858496 tatgcaccttttaattaaccaatttcatacatgtcatctacttcaactagcatgcagtatatttatgaaactaagagcactcacatttgtgattaatttt 6858595  T
Q  626 caaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnacttctttg 725  Q
    || |||||||||||||| ||||||||||  |||   || ||||| | ||||||||||||||||||||||||||| |||| |||        |||||||||    
T  6858596 catatttcaacaaaggtgggagctaaaatttattatacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttttacttctttg 6858695  T
Q  726 aaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttccgggc 825  Q
    ||||||||  ||||||||| |||  || ||||  |||||||||| | |||||||||| |||| ||| |||||||||||||| || ||| ||||||| |||    
T  6858696 aaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaatcatcacctaaatttccaggc 6858795  T
Q  826 cgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatag 918  Q
    |||||||||||| |||| ||| |||||| | || ||||| ||||||||| ||| ||| ||||||||||||||| |||||||||  ||||||||    
T  6858796 cgatacagaaaaaagtggtctgtcactccaacaaacaagtaaacaatcattttcttctttaaacttgtatttatgactatatcgctgcaatag 6858888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 6725153 - 6725534
Alignment:
Q  22 catcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcattagca-aaattatttaataccatcgcatggccttcttcatt 120  Q
    |||| ||||||||| |||||| ||||||| |||| |||||| ||| ||   ||||||||||||| ||||| |||||||||||| |||||| ||||| |||    
T  6725153 catcatcataagttatgcatatcatacaaattctggagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattctttatt 6725252  T
Q  121 ttcaattttaacttattcctcttgttgatataaaagtgttttaattgttgnnnnnnntt---cttacatggacatt--------cagatttgtcgttgtt 209  Q
    ||||||||| || |||| | | | ||||||||||| |||||||||||| |       ||   ||| ||||| ||||        || ||||||| |||||    
T  6725253 ttcaatttttacgtatttcacctattgatataaaactgttttaattgtggatatcttttttacttgcatggtcatttatataatcatatttgtcattgtt 6725352  T
Q  210 cataggtgaattagtttctttcaaagcatgcttatatgaaccttcaaaatatatgcaatgaatcgaagtatatctgaacgaggatgttttctgaaaacaa 309  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||| | | | |||  || ||||||||| ||||||||||||| ||||||||||||    
T  6725353 catacgtgaattagtttctttcaaagcatgattatatgaatcttcaaaagagacgaaattcatagaagtatatttgaacgaggatgtcttctgaaaacaa 6725452  T
Q  310 tgatatttttgagaaactgatagctttatctataaaagtaggacagt-aataggcaacagaaatagtaacaagtaacataat 390  Q
    ||||||||| |||||| |||||| |||||  ||| |||| ||||||| ||||||||||| ||||| || |||||||||||||    
T  6725453 tgatattttcgagaaattgatagttttatgcatataagttggacagtaaataggcaacataaatactagcaagtaacataat 6725534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 620 - 928
Target Start/End: Original strand, 6412534 - 6412842
Alignment:
Q  620 tattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnact 719  Q
    |||||||| |||||||| ||||| ||||||||||  ||| |  | ||||||| ||||||||||||||||||||||| |||||||| |||        |||    
T  6412534 tattttcatatttcaacgaaggtgggagctaaaaattattgtgcagaaatgaattgatattaacattaacaacaattcaagaaggatatgttggtttact 6412633  T
Q  720 tctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaattt 819  Q
    ||||||||| ||||||||||||||| |||| || ||||||||||||||||| | ||   |||  ||||| || |||||| ||  ||| |||||| |||||    
T  6412634 tctttgaaatactttgaaaatccagaaaacaaaaacataaaatcttctaatggcgatcctcaaattccaccatgtatatgaaacatcatctcctaaattt 6412733  T
Q  820 ccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatagg 919  Q
    || ||||||||||||||| |||| ||| |||||| |||||||||| |||||||||  || ||| ||||||||||| ||  |||||||||  ||||||||     
T  6412734 ccaggccgatacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaataga 6412833  T
Q  920 ttagttgct 928  Q
    |||||||||    
T  6412834 ttagttgct 6412842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 73 - 390
Target Start/End: Original strand, 6594494 - 6594818
Alignment:
Q  73 tgcttcattagcaaaa-ttatttaataccatcgcatggccttcttcattttcaattttaacttattcctcttgttgatataaaagtgttttaattgttgn 171  Q
    |||||||||||||||| || |||||||||||| |||||| ||||| |||||||||||| || |||||| | | ||||||||||| |||||||||||| |     
T  6594494 tgcttcattagcaaaaattctttaataccatctcatggcattctttattttcaatttttacgtattccacctattgatataaaactgttttaattgtgga 6594593  T
Q  172 nnnnnnttcttacatggacat--------tcagatttgtcgttgttcataggtgaattagtttctttcaaagcatgcttatatgaaccttcaaaatatat 263  Q
           | | |||||| |||        ||| ||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||| | |     
T  6594594 gatc---tatcacatgggcatgtctataatcatatttgtcattgttcctaggtgaattagtttctttcaaagcgtgcttataggaaccttcaaaagagac 6594690  T
Q  264 gcaatgaatcgaagtatatctgaacgaggatgttttctgaaaacaatgatatttttgagaaactgatagctttatctataaaagtaggacagt-aatagg 362  Q
    |||||  || || |||||||||||||||||||| ||||||||||| |||||||||  |||||  ||||| |||||  |||||||| ||||||| ||||||    
T  6594691 gcaatttatagatgtatatctgaacgaggatgtcttctgaaaacattgatattttcaagaaatcgatagttttatacataaaagttggacagtaaatagg 6594790  T
Q  363 caacagaaatagtaacaagtaacataat 390  Q
    |||| |||||| || | |||||||||||    
T  6594791 caacggaaatactagccagtaacataat 6594818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 216 - 391
Target Start/End: Original strand, 6852385 - 6852557
Alignment:
Q  216 tgaattagtttctttcaaagcatgcttatatgaaccttcaaaatatatgcaatgaatcgaagtatatctgaacgaggatgttttctgaaaacaatgatat 315  Q
    ||||||||||||||||||  ||| ||||||||||||||||| | |||  ||||  || | ||||||||||||||| |||   ||||||||||||||||||    
T  6852385 tgaattagtttctttcaacacatacttatatgaaccttcaacagatacacaattcataggagtatatctgaacgaagat---ttctgaaaacaatgatat 6852481  T
Q  316 ttttgagaaactgatagctttatctataaaagtaggacagta-ataggcaacagaaatagtaacaagtaacataatt 391  Q
    |||||||||| |||||||||||| ||||| |  ||||||||| |||||||||||||||| |||| ||||||||||||    
T  6852482 ttttgagaaattgatagctttatgtataata-aaggacagtacataggcaacagaaatactaacgagtaacataatt 6852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 6852237 - 6852386
Alignment:
Q  22 catcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcattagca-aaattatttaataccatcgcatggccttcttcatt 120  Q
    |||| ||||||||| ||||||||||||||||||| || | | ||| ||   ||||||||| ||| ||||||||||||||| || |||||| ||||| |||    
T  6852237 catcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattggcacaaattatttaataccgtctcatggcattctttatt 6852336  T
Q  121 ttcaattttaacttattcctcttgttgatataaaagtgttttaattgttg 170  Q
    ||||||||| |||| |||| | | ||||||||||||||||||||||||||    
T  6852337 ttcaatttttacttgttccacctattgatataaaagtgttttaattgttg 6852386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 808 - 918
Target Start/End: Original strand, 8572570 - 8572680
Alignment:
Q  808 tctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatat 907  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||||| |||||||||| ||||||||| | | ||| ||||||||||||||  ||||||||    
T  8572570 tctcctaaatttccaggcggatacagaaaagagtggtctatcactccagcagacaagcaaacaatcattctcttctttaaacttgtatttgtgactatat 8572669  T
Q  908 caatgcaatag 918  Q
    |  ||||||||    
T  8572670 cgctgcaatag 8572680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 392 - 565
Target Start/End: Original strand, 6594858 - 6595017
Alignment:
Q  392 gtttgaacattaactgcatgctgttacatctgatatgattttgtagacagcaatgtgttgacagaaattagatagannnnnnngaacagaaaacagcatg 491  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||              |||||| |       ||||||||||||| |||    
T  6594858 gtttgaacgttaactgcatgctgttacatctgatatgattttgttgacagcaat--------------tagatatatttttttgaacagaaaacagtatg 6594943  T
Q  492 ggatatatattcaatattagatagcaagtatgagtactctttgtatgcaccttttaattaaccaattccataca 565  Q
    |   ||||| || |||||||||||||||||||||||  | |||||||||  |||||||||||||||||||||||    
T  6594944 gacaatatactcgatattagatagcaagtatgagtagaccttgtatgcatattttaattaaccaattccataca 6595017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 6879406 - 6879297
Alignment:
Q  17 atcaccatcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcattagca-aaattatttaataccatcgcatggccttct 115  Q
    |||| |||| ||||| ||||||||| | |||||||||||||||||| ||| ||  |||||||||||||| ||||||||||| || ||| |||||| ||||    
T  6879406 atcatcatcatcatatgttttgcatggtatacaacttcttgagcctctaatttcagtgcttcattagcacaaattatttaaaacaatctcatggcattct 6879307  T
Q  116 tcattttcaa 125  Q
    ||||||||||    
T  6879306 tcattttcaa 6879297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 392 - 540
Target Start/End: Original strand, 6412340 - 6412489
Alignment:
Q  392 gtttgaacattaactgcatgctgttacatctgatatgattttgtagacagcaatgtgttgacagaaattaga-tagannnnnnngaacagaaaacagcat 490  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| || |||  || |||| | |         |||||||||||| ||    
T  6412340 gtttgaacattaactgcatgctgttacatttgatatgattttgtagacagtcatgtcttcacaacaactagatttgtttatttttaacagaaaacagtat 6412439  T
Q  491 gggatatatattcaatattagatagcaagtatgagtactctttgtatgca 540  Q
    ||   ||||||||||||||| ||||||||||||||||| | |||||||||    
T  6412440 ggacaatatattcaatattatatagcaagtatgagtacaccttgtatgca 6412489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 803 - 928
Target Start/End: Original strand, 6595165 - 6595290
Alignment:
Q  803 aatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgac 902  Q
    |||| |||||| ||||||| ||| | ||||||||| |||| ||| |||||| |||||||||| |||||||||  || ||| ||||||||||| ||  |||    
T  6595165 aatcatctcctaaatttccaggctggtacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgac 6595264  T
Q  903 tatatcaatgcaataggttagttgct 928  Q
    ||||||  |||||||| |||||||||    
T  6595265 tatatcgctgcaatagattagttgct 6595290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 6234927 - 6234686
Alignment:
Q  22 catcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcatta-------gca-aaattatttaataccatcgcatggcctt 113  Q
    |||| ||||| |||||||||| |||||| |||||||||||| ||| ||  |||||||||||       ||| ||||||||||| ||||||  ||||  ||    
T  6234927 catcatcataggttttgcataacatacagcttcttgagcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatctgatgggatt 6234828  T
Q  114 cttcattttcaattttaacttattcctcttgttgatataaaagtgttttaattgttgnnnnnnn----ttcttacatggacattcagatttgtcgttgtt 209  Q
    ||| |||||||| ||| ||||||||  | | ||||||||||||| ||||||||||||           || ||| ||  || |||| |||| ||||||||    
T  6234827 ctttattttcaaattttacttattctacctattgatataaaagtattttaattgttgaagtcctatttttattagataaactttcatatttttcgttgtt 6234728  T
Q  210 cataggtgaattagtttctttcaaagcatgcttatatgaacctt 253  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||    
T  6234727 cataggtgaattagtt--tttcaaagcatgcctatatgaacctt 6234686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 6852607 - 6852671
Alignment:
Q  391 tgtttgaacattaactgcatgctgttacatctgatatgattttgtagacagcaatgtgttgacag 455  Q
    |||||||||||||||||| |  |||||| ||||||||| |||||||||||||||||| |||||||    
T  6852607 tgtttgaacattaactgcgtattgttacttctgatatggttttgtagacagcaatgttttgacag 6852671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 6412113 - 6412203
Alignment:
Q  198 tttgtcgttgttcataggtgaattagtttctttcaaagcatgcttatatgaaccttcaaaatatatgcaatgaatcgaagtatatctgaac 288  Q
    |||||| ||||||||||| ||||||| ||||||||||| ||| ||||| |||||||||||| |   |||||  || |||||||||||||||    
T  6412113 tttgtcattgttcataggagaattagattctttcaaagtatgattatacgaaccttcaaaagagtcgcaattcatagaagtatatctgaac 6412203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 6725611 - 6725653
Alignment:
Q  392 gtttgaacattaactgcatgctgttacatctgatatgattttg 434  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  6725611 gtttgaacattaactgcatgctgttacatctgaaatgattttg 6725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 6165586 - 6165524
Alignment:
Q  192 ttcagatttgtcgttgttcataggtgaattagtttctttcaaagcatgcttatatgaaccttcaa 256  Q
    |||| ||||||| |||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  6165586 ttcatatttgtcattgttcataggtaaattagttt--ttcaaagcatgcatatatgaaccttcaa 6165524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 6411718 - 6411807
Alignment:
Q  28 cataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcattagca-aaattatttaataccatcgcatggccttctt 116  Q
    |||||||| |||||||| |||||||||| |||||| ||| ||   ||||||||||||| ||||| |||||||||||| |||||| |||||    
T  6411718 cataagttatgcatagcgtacaacttctagagcctctaatttcattgcttcattagcacaaattctttaataccatctcatggcattctt 6411807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 6255723 - 6255599
Alignment:
Q  22 catcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttc-------attagca-aaattatttaataccatcgcatggcctt 113  Q
    |||| |||||||||||||||| |||||| |||||||||||| ||| ||  |||||||       ||||||| ||||||||||| ||||||  ||||  ||    
T  6255723 catcatcataagttttgcataacatacagcttcttgagcctctaatttaagtgcttcattaattattagcacaaattatttaaaaccatccgatgggatt 6255624  T
Q  114 cttcattttcaattttaacttattc 138  Q
    |||||||||||| ||| ||||||||    
T  6255623 cttcattttcaaattttacttattc 6255599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 6412201 - 6412285
Alignment:
Q  305 aacaatgatatttttgagaaactgatagctttatctataaaagtaggacagt-aataggcaacagaaatagtaacaagtaacata 388  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||| ||| | | ||||| ||||||| ||| || || ||||||||    
T  6412201 aacaatgatatttttgagaaattgatagctgtatgtataaaagttggatattaaatagacaacagatatactagcaggtaacata 6412285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 6412002 - 6412072
Alignment:
Q  99 ccatcgcatggccttcttcattttcaattttaacttattcctcttgttgatataaaagtgttttaattgtt 169  Q
    ||||| |||||| ||||| |||||||||||| ||||||||| | | ||||||| ||  |||||||||||||    
T  6412002 ccatcccatggcattctttattttcaatttttacttattccacctattgatattaagctgttttaattgtt 6412072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 184; Significance: 4e-99; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 216 - 874
Target Start/End: Original strand, 14818 - 15479
Alignment:
Q  216 tgaattagtttctttcaaagcatgcttatatgaaccttcaaaatatatgcaatgaatcgaagtatatctgaacgaggatgttttctgaaaacaatgatat 315  Q
    ||||||||||||||||||  ||| ||||||||| ||||||| | |||  ||||  || | |||||||||||||||||||   ||||||||||||||||||    
T  14818 tgaattagtttctttcaacacatacttatatgacccttcaacagatacacaattcataggagtatatctgaacgaggat---ttctgaaaacaatgatat 14914  T
Q  316 ttttgagaaactgatagctttatctataaaagtaggacagta-ataggcaacagaaatagtaacaagtaacataat-tgtttgaacattaactgcatgct 413  Q
    |||||||||| |||||||||||| ||||| |  ||||||||| |||||||||||||||| |||||  |||||  || ||||  |||||||||| | |  |    
T  14915 ttttgagaaattgatagctttatgtataataa-aggacagtacataggcaacagaaatactaaca--taacaatatatgtt--aacattaactacgtatt 15009  T
Q  414 gttacatctgatatgattttgtagacagcaatgtgttgacagaaattagatagannnnnnngaacagaaaacagcatgggatatatattcaatattagat 513  Q
     |||| ||||||||| |||||||||||||||||| ||||||  | ||||||| |       ||||||||||||| || |   || |||| || |||||||    
T  15010 tttacttctgatatggttttgtagacagcaatgttttgacaagacttagatatatatttttgaacagaaaacagtattgacaatttatttaacattagat 15109  T
Q  514 agcaagtatgagtactctttgtatgcaccttttaattaaccaattccatacacgtcgtattcttcaactaacatgcaatatatttatgaaactaagaaca 613  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| ||||||||||||||||||| ||    
T  15110 agcaagtatgaatactccttttatgcaccttttaattaaccaattccatacatgtcatcttcttcaactagcatgcagtatatttatgaaactaagagca 15209  T
Q  614 gtgacat---------attttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaagg 704  Q
     | ||||         ||||||| |||||||||||||| ||| ||||||  ||| | || ||||| | ||||||||||||||||||||||||||| ||||    
T  15210 ctcacatttgagattaattttcatatttcaacaaaggtgggaactaaaatttattgtacagaaataaattgatattaacattaacaacaatacaataagg 15309  T
Q  705 ttatannnnnnnacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaa 804  Q
     |||        |||||||||||||||||  ||||||||| |||  || ||||  |||||||||| | |||||||||| |||| ||| ||||||||||||    
T  15310 atatgttgttttacttctttgaaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaa 15409  T
Q  805 tcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatca 874  Q
    || || ||| ||||||| ||||||||||||||| |||| ||| |||||| | || | ||| |||||||||    
T  15410 tcatcacctaaatttccaggccgatacagaaaaaagtggtctgtcactccaacaaagaagtaaacaatca 15479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 14670 - 14819
Alignment:
Q  22 catcgtcataagttttgcatagcatacaacttcttgagcctgtaactttggtgcttcattagca-aaattatttaataccatcgcatggccttcttcatt 120  Q
    |||| ||||||||| ||||||||||||||||||| || | | ||| ||   ||||||||||||| ||||||||||||||| || |||||| ||||| |||    
T  14670 catcatcataagttatgcatagcatacaacttctagaccgtctaatttcattgcttcattagcacaaattatttaataccgtctcatggcattctttatt 14769  T
Q  121 ttcaattttaacttattcctcttgttgatataaaagtgttttaattgttg 170  Q
    ||||||||| |||| |||| | | |||||||||| |||||||||||||||    
T  14770 ttcaatttttacttgttccacctattgatataaacgtgttttaattgttg 14819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 42151886 - 42151817
Alignment:
Q  184 catggacattcagatttgtcgttgttcataggtgaattagtttctttcaaagcatgcttatatgaaccttcaaaa 258  Q
    |||||||||||||||||||| ||||| ||||||||||||     |||  ||||||||||||||||||||| ||||    
T  42151886 catggacattcagatttgtcattgttgataggtgaatta-----tttagaagcatgcttatatgaacctttaaaa 42151817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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