View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_high_15 (Length: 301)
Name: NF13389_high_15
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 3951208 - 3951483
Alignment:
| Q |
17 |
aattatagttttcagttctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgaccttc---catatatacaatgtcctgcac |
113 |
Q |
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| T |
3951208 |
aattatagttttcagttctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcac |
3951307 |
T |
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| Q |
114 |
acttttatgcagaaaccgttgtataataatactaaaaatttactctgcagaaattagagtaaactcattttgttccttaaagtcaagaattgggacttga |
213 |
Q |
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| T |
3951308 |
acttttatgcagaaaccgttgtataataatactaaaaatttactctgcagaaattagagtaaactcattttgttccttaaagtcaagaattgggacttga |
3951407 |
T |
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| Q |
214 |
aaacttcgtcacacgtgtagctcggagggattttaaccagtaaacttttatgagttttaacaacttagaattgcct |
289 |
Q |
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| T |
3951408 |
aaacttcgtcacacgtgtagctcggagggattttaaccagtaaacttttatgagttttaacaacttagagttgcct |
3951483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 289
Target Start/End: Complemental strand, 4027646 - 4027393
Alignment:
| Q |
33 |
tctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgaccttccatatatacaatgtcctgcacacttttatgcagaaaccgt |
132 |
Q |
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| T |
4027646 |
tctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgtagaaatcat |
4027549 |
T |
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| Q |
133 |
tgtataataatactaaaaatttactctgcagaaattagagtaaac--tcattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtg |
230 |
Q |
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| T |
4027548 |
tgtataatagaactaaata-ttaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatt--tctcatgtg |
4027452 |
T |
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| Q |
231 |
tagctcggagggattttaaccagtaaacttttatgagttttaacaacttagaattgcct |
289 |
Q |
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| T |
4027451 |
taggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcct |
4027393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4013367 - 4013305
Alignment:
| Q |
30 |
agttctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgaccttc |
92 |
Q |
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| T |
4013367 |
agttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc |
4013305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 4013193 - 4013094
Alignment:
| Q |
189 |
cttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagctcggagggattttaaccagtaaacttttatgagttttaacaacttagaattgcc |
288 |
Q |
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| T |
4013193 |
cttaaagtca-gaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaattgcc |
4013095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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