View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_high_16 (Length: 273)
Name: NF13389_high_16
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 12182672 - 12182848
Alignment:
| Q |
18 |
atgaacatagtttaaaagtgggcttcactatttttatcaacttttaataaaactagaatattaccaagtttcttgatcaaaaaagaatattacaaagttt |
117 |
Q |
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| T |
12182672 |
atgaacatagtttaaaagtgggcttcactatttttatcaacttttaataaaactagaatattac----------gatcaaaaaagaatattacaaagttt |
12182761 |
T |
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| Q |
118 |
aatcaagcttttatacgggttaatttacaagtctagccaagaccttacatagggttaattccctaaatttagaaattgatccgtcct |
204 |
Q |
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| T |
12182762 |
aatcaagcctttatacgggttaatttacaagtctagccaagaccttacatagggttaattccctaaatttagaaattgatccgtcct |
12182848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 12188535 - 12188605
Alignment:
| Q |
18 |
atgaacatagtttaaaa-gtgggcttcactatttttatcaacttttaataaaactagaatattaccaagttt |
88 |
Q |
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| T |
12188535 |
atgaacatggtttaaaaagtggg-ttcaatatttttattaacttttaataaaactagaatattaccaggttt |
12188605 |
T |
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