View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13389_high_3 (Length: 771)

Name: NF13389_high_3
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13389_high_3
NF13389_high_3
[»] chr4 (13 HSPs)
chr4 (18-468)||(27446358-27446818)
chr4 (469-763)||(27451195-27451489)
chr4 (469-750)||(23907324-23907605)
chr4 (469-749)||(48623549-48623829)
chr4 (469-723)||(1778038-1778293)
chr4 (469-694)||(435267-435492)
chr4 (469-683)||(53703655-53703870)
chr4 (468-721)||(39707472-39707725)
chr4 (642-734)||(16001137-16001230)
chr4 (18-200)||(27438949-27439140)
chr4 (33-137)||(27559054-27559157)
chr4 (657-749)||(56224743-56224835)
chr4 (474-539)||(2296364-2296429)
[»] chr7 (13 HSPs)
chr7 (469-749)||(32629592-32629868)
chr7 (473-749)||(36650974-36651250)
chr7 (469-748)||(33350828-33351107)
chr7 (469-714)||(39907401-39907646)
chr7 (469-724)||(38896622-38896877)
chr7 (469-733)||(24178217-24178481)
chr7 (528-749)||(11592669-11592890)
chr7 (469-655)||(22346586-22346772)
chr7 (469-612)||(38606156-38606298)
chr7 (469-579)||(46356873-46356983)
chr7 (469-542)||(36870346-36870419)
chr7 (465-524)||(11593158-11593217)
chr7 (671-740)||(33738551-33738620)
[»] chr6 (8 HSPs)
chr6 (469-749)||(20428659-20428939)
chr6 (473-749)||(5260274-5260550)
chr6 (491-736)||(30669888-30670132)
chr6 (469-749)||(6082369-6082660)
chr6 (469-749)||(9705778-9706035)
chr6 (469-618)||(3629377-3629526)
chr6 (517-748)||(26290765-26290995)
chr6 (490-680)||(2681479-2681669)
[»] chr8 (7 HSPs)
chr8 (469-749)||(15216293-15216571)
chr8 (469-749)||(36544132-36544411)
chr8 (469-703)||(42855035-42855271)
chr8 (469-570)||(36566263-36566364)
chr8 (506-575)||(6184814-6184883)
chr8 (636-716)||(13588720-13588800)
chr8 (636-750)||(31977595-31977709)
[»] chr2 (9 HSPs)
chr2 (472-722)||(45368651-45368901)
chr2 (469-749)||(24584628-24584911)
chr2 (476-749)||(8179773-8180046)
chr2 (469-716)||(452638-452885)
chr2 (568-750)||(13148301-13148482)
chr2 (519-749)||(37281087-37281316)
chr2 (469-554)||(2609703-2609788)
chr2 (469-542)||(14769487-14769560)
chr2 (468-511)||(13148540-13148583)
[»] chr1 (10 HSPs)
chr1 (469-743)||(43241403-43241677)
chr1 (469-750)||(8670897-8671178)
chr1 (469-749)||(51441786-51442066)
chr1 (490-749)||(49348445-49348703)
chr1 (469-713)||(29173551-29173795)
chr1 (469-739)||(32405486-32405752)
chr1 (469-698)||(45833593-45833820)
chr1 (636-717)||(11681833-11681914)
chr1 (490-694)||(35829434-35829638)
chr1 (469-683)||(34828107-34828321)
[»] chr5 (9 HSPs)
chr5 (469-749)||(2076496-2076776)
chr5 (469-749)||(20317971-20318251)
chr5 (469-749)||(24177504-24177784)
chr5 (515-749)||(1288596-1288830)
chr5 (472-749)||(26939-27215)
chr5 (644-714)||(22832091-22832161)
chr5 (469-708)||(37123591-37123831)
chr5 (643-716)||(25937109-25937183)
chr5 (573-707)||(756080-756214)
[»] chr3 (7 HSPs)
chr3 (469-749)||(51448731-51449011)
chr3 (469-733)||(52137824-52138088)
chr3 (487-749)||(38849082-38849344)
chr3 (474-750)||(3368742-3369016)
chr3 (552-724)||(27916583-27916753)
chr3 (472-539)||(48220971-48221038)
chr3 (469-542)||(50630343-50630414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (469-749)||(13280-13559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (469-677)||(30520-30728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (487-654)||(90130-90297)
[»] scaffold0171 (1 HSPs)
scaffold0171 (491-608)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (515-578)||(25277-25340)
[»] scaffold0140 (1 HSPs)
scaffold0140 (592-662)||(14931-15001)
[»] scaffold0073 (1 HSPs)
scaffold0073 (636-750)||(20494-20608)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 27446358 - 27446818
Alignment:
Q  18 attagttagttaagccaaattgtacagcatacactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatt 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446358 attagttagttaagacaaattgtacagcatacactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatt 27446457  T
Q  118 tgagtttttggtcgaa----------tttctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtcc 207  Q
    ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446458 tgagtttttggtcgaatttcaacgaatttctgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattctgttgtcc 27446557  T
Q  208 aataaacgtgtaatttaacaatggcataggtcaaaagaaaacataattctcaccgaaggattactattagctagttcttttattggaagaagtaggagaa 307  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27446558 aataaacatgtaatttaacaatggcataggtcaaaagaaaacataattctcaccgaaggattactatttgctagttcttttattggaagaagtaggagaa 27446657  T
Q  308 caattgcggttgtaaaattgcaaaatgaaatcgaagagccttgtaatcataagttcgtcagcctcgggcatgtcaaaacaaccatatgttctagagatgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27446658 caattgcggttgtaaaattgcaaaatgaaatcgaagagccttgtaatcataagttcgtcagcctcgggcatgtcaaaacaaccatatgttctagaggtgt 27446757  T
Q  408 ccatcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446758 ccatcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 469 - 763
Target Start/End: Original strand, 27451195 - 27451489
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct 27451394  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataaggtgcttcatctc 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27451395 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgtatatcccctttgttcttataaggtgcttcttctc 27451489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 469 - 750
Target Start/End: Original strand, 23907324 - 23907605
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||||||  |||||||||||||  || || |||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 23907523  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 750  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  23907524 ttcccataactttatggtatgactcattagcttaattcccctataattcgcggaattttgtatatcccccttgttcttataa 23907605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 48623549 - 48623829
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct 48623748  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  48623749 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttata 48623829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 469 - 723
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 567  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  568 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 667  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc 1778237  T
Q  668 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 723  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778238 tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 469 - 694
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||  ||| ||  |||||||||||||  || || |||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct 435293  T
Q  669 ttcccataacttcatggtatgactca 694  Q
    ||||||||||||||||||||||||||    
T  435292 ttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 469 - 683
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 567  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  568 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 667  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  |||||||||||||  || || ||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc 53703671  T
Q  668 tttcccataacttcat 683  Q
    ||||||||||||||||    
T  53703670 tttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 468 - 721
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
Q  468 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 567  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  568 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- 666  Q
    |||||||||||  || ||| | ||||| | || ||||||||||||| ||||  |||||   |||   || | | ||||||||||||||| ||||| |||     
T  39707625 cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct 39707527  T
Q  667 ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc 721  Q
     ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707526 ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 642 - 734
Target Start/End: Original strand, 16001137 - 16001230
Alignment:
Q  642 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgtatatc 734  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |  ||||||| |||||||||| |||||| |||||||||    
T  16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgtatatc 16001230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 27438949 - 27439140
Alignment:
Q  18 attagttagttaagccaaattgtacagcatacactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatt 117  Q
    ||||||||| |||| | ||||||||| || | |  |||||||||||||| ||||| |   |||||| || | ||| |||| |||||||||||||||| ||    
T  27438949 attagttagctaagactaattgtacatcagatatcttcatttttcattcttttcttaatggaaatgacagctaactgagatagttatgaacagagatttt 27439048  T
Q  118 tgagtttttggtcgaatttc---------tgtatacatcttatttttgcacaaaagattgtatatactaacagcaacctttttacatattct 200  Q
    ||| || | |||| ||||||         |||||||||||||||||||||||||||||| ||||||  ||||| | |||||||||| |||||    
T  27439049 tgacttgtcggtcaaatttcaaagaactctgtatacatcttatttttgcacaaaagattatatatagaaacagaaccctttttacaaattct 27439140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 27559157 - 27559054
Alignment:
Q  33 caaattgtacagcatacactttcatttttcattcgtttctaagctgaaatgccatccaaccgagacagttatgaacagagatatttgagtttttggtcga 132  Q
    |||||||||||| | || |||| ||||||||||| ||| ||||| ||| || |||||||| |||| ||||||||||| | |||||||| ||  |||||||    
T  27559157 caaattgtacagaaaactctttaatttttcattctttt-taagcagaactgtcatccaacggagatagttatgaacatatatatttgacttcatggtcga 27559059  T
Q  133 atttc 137  Q
    |||||    
T  27559058 atttc 27559054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 749
Target Start/End: Complemental strand, 56224835 - 56224743
Alignment:
Q  657 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||  | ||||  ||||||||| | || ||||||||    
T  56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatttacacaattttgtatatcctccttattcttata 56224743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  474 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 539  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 5e-92; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 32629868 - 32629592
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| ||||||||||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct 32629673  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  32629672 ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatgttgtatatcccccttgttcttata 32629592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 473 - 749
Target Start/End: Complemental strand, 36651250 - 36650974
Alignment:
Q  473 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 572  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  573 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 672  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc 36651051  T
Q  673 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||| |||||||||||    
T  36651050 cataacttcatggtatgactcattagcttaattctcctataattcacgcaattttgtatatcccccttgttcttata 36650974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 469 - 748
Target Start/End: Original strand, 33350828 - 33351107
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  |  || |||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct 33351027  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttat 748  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  33351028 ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttat 33351107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 469 - 714
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||  | ||||  |||||||||||||  || || |||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct 39907600  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataa 714  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39907601 ttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 469 - 724
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 38896678  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 724  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38896677 tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 469 - 733
Target Start/End: Original strand, 24178217 - 24178481
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||||||||| | ||| |||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct 24178416  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatat 733  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||    
T  24178417 ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaattctgtatat 24178481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 528 - 749
Target Start/End: Complemental strand, 11592890 - 11592669
Alignment:
Q  528 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 627  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  628 ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgat 727  Q
     ||||  ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11592790 gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatttt 11592691  T
Q  728 gtatatcccctttgttcttata 749  Q
    |||||||||| ||||| |||||    
T  11592690 gtatatcccccttgtttttata 11592669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 469 - 655
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc 655  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||  ||||||  |||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 469 - 612
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 612  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 469 - 579
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  569 gaagtaagtag 579  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 542  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  465 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 524  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 740
Target Start/End: Original strand, 33738551 - 33738620
Alignment:
Q  671 cccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatccccttt 740  Q
    ||||||||||||| ||||||||||| || |||||| || |||| || |||||||  |||| |||||||||    
T  33738551 cccataacttcatagtatgactcataagtttaatttccttatattttgcgcaattttgtaaatccccttt 33738620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 20428659 - 20428939
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | ||||||||||||| |||||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct 20428858  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  20428859 ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatgttgtatatcccccttgttcttata 20428939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 473 - 749
Target Start/End: Original strand, 5260274 - 5260550
Alignment:
Q  473 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 572  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  573 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 672  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||||||||||||||||||||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc 5260473  T
Q  673 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  5260474 cataacttcatggtatgactcattagcttaattcccctataattcgcgcattgttgtatatcccccttgttcttata 5260550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 491 - 736
Target Start/End: Complemental strand, 30670132 - 30669888
Alignment:
Q  491 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 590  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  591 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga 690  Q
    |||||||||||  |||||||||||||||  ||||||  |||| |||||||  |||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  30670032 agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga 30669934  T
Q  691 ctcattagcttaattcccctataattcgcgcaatgatgtatatccc 736  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||    
T  30669933 ctcattagcttaattcccctataatttgcgcatttttgtatatccc 30669888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 6082660 - 6082369
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc 657  Q
    ||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           ||||||  ||||  ||||||  |||||||||||||      
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt 6082461  T
Q  658 tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||    
T  6082460 tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatgccccttgttcttata 6082369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 9706035 - 9705778
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| ||||||||||               ||    
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagt---------------ct 9705851  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9705850 ttcccataacttcatggtatga--------cttaattcccctataattcgcgcaatgttgtatatcccccttgttcttata 9705778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 618
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 618  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 517 - 748
Target Start/End: Complemental strand, 26290995 - 26290765
Alignment:
Q  517 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 616  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  617 ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 716  Q
    ||   || ||  |||| |||| || |||| |||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||    
T  26290896 attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt 26290797  T
Q  717 cgcgcaatgatgtatatcccctttgttcttat 748  Q
    ||| ||||  ||||||||||| ||||||||||    
T  26290796 cgcacaattttgtatatcccccttgttcttat 26290765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 680
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
Q  490 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 589  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | ||  ||||||| |    ||  ||||||| ||||||  || ||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca 2681578  T
Q  590 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt 680  Q
    ||||| || |  ||| |||||||||||||  ||||||  |  |  |||||| |||||||| |||||  ||||| |||||||||| ||||||    
T  2681579 tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt 2681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 5e-86; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 15216293 - 15216571
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||||||||||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct 15216490  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||    
T  15216491 ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatgttgtatatccaccttgttcttata 15216571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 36544411 - 36544132
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 36544213  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||    
T  36544212 ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaattttgtatatcccccttgttcttata 36544132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 469 - 703
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 566  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  567 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc 666  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| ||||||||||||||||||||||  |    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc 42855234  T
Q  667 ctttcccataacttcatggtatgactcattagcttaa 703  Q
    |||||||||||||||||||||||||||||||||||||    
T  42855235 ctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 570
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  569 ga 570  Q
    ||    
T  36566363 ga 36566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  506 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 575  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 636 - 716
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
Q  636 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 716  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||    
T  13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt 13588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 750
Target Start/End: Complemental strand, 31977709 - 31977595
Alignment:
Q  636 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 735  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  31977709 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 31977610  T
Q  736 cctttgttcttataa 750  Q
     ||||||||||||||    
T  31977609 tctttgttcttataa 31977595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 3e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 472 - 722
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
Q  472 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 571  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  572 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 671  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc 45368850  T
Q  672 ccataacttcatggtatgactcattagcttaattcccctataattcgcgca 722  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45368851 ccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 24584628 - 24584911
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac 665  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  |||||||||||| | ||   ||| ||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac 24584827  T
Q  666 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  24584828 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaattttgtatatcccctttgttcttata 24584911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 476 - 749
Target Start/End: Complemental strand, 8180046 - 8179773
Alignment:
Q  476 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 575  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  576 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat 675  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat 8179847  T
Q  676 aacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| | |||||||||||    
T  8179846 aacttcatggtatgacttattagcttaattcccctataattcgcgcaattttgtatatcctccttgttcttata 8179773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 469 - 716
Target Start/End: Original strand, 452638 - 452885
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 452837  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataatt 716  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  452838 ttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 568 - 750
Target Start/End: Complemental strand, 13148482 - 13148301
Alignment:
Q  568 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 667  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
T  13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
Q  668 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 750  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |  |||||  ||||||||||||||||||||||||    
T  13148383 tttcccataacttcatggtaagactcattagtttaattcccctataatccaagcaattttgtatatcccctttgttcttataa 13148301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 519 - 749
Target Start/End: Complemental strand, 37281316 - 37281087
Alignment:
Q  519 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 618  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T
Q  619 aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 718  Q
      ||||||  |||| | ||| | ||| ||||||||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  37281216 tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg 37281117  T
Q  719 cgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||  ||||||||||| |||||||||||    
T  37281116 cgcaattttgtatatcccc-ttgttcttata 37281087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 469 - 554
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 554  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 542
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 542  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  468 tcacaaaatctctctaggtactctatcatacgccttccccaaat 511  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 469 - 743
Target Start/End: Original strand, 43241403 - 43241677
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 43241602  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgtt 743  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||| |||||    
T  43241603 ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaattttgtatatcccccttgtt 43241677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 469 - 750
Target Start/End: Complemental strand, 8671178 - 8670897
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||| ||  ||||||||| |||  || || |||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct 8670979  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  8670978 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcagttttgtatatcccccttgttcttataa 8670897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 51441786 - 51442066
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51441985  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||| |||||||||||    
T  51441986 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtgattttgtatatcccccttgttcttata 51442066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 490 - 749
Target Start/End: Original strand, 49348445 - 49348703
Alignment:
Q  490 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 589  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  590 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 689  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||||||||| |||||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg 49348644  T
Q  690 actcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||| |||||||||||||||||  |||||| |||| |||||||||||    
T  49348645 actcattagcttaattctcctataattcgcgcaattttgtata-cccccttgttcttata 49348703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 469 - 713
Target Start/End: Original strand, 29173551 - 29173795
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| |||||||||| |||| ||||| | |||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct 29173750  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctata 713  Q
    ||| |||||||| || ||| |||||||||| ||||||||||||||    
T  29173751 ttcgcataacttgattgtacgactcattagtttaattcccctata 29173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 469 - 739
Target Start/End: Original strand, 32405486 - 32405752
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||| |    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt 32405681  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctt 739  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||| || ||||  |||||||| ||||    
T  32405682 ttcccataacttcatggtatgactcataaggttaatttccctataatttgcacaattttgtatatcgcctt 32405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 469 - 698
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   ||| |||||||||||  |||||||||||||||| | | |    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat 45833623  T
Q  669 ttcccataacttcatggtatgactcattag 698  Q
    ||| ||||||||||||| ||||||| ||||    
T  45833622 ttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 636 - 717
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
Q  636 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 717  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 490 - 694
Target Start/End: Original strand, 35829434 - 35829638
Alignment:
Q  490 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 589  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  590 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 689  Q
    |||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| || ||||||||||||||| |||||||    
T  35829534 tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg 35829633  T
Q  690 actca 694  Q
    |||||    
T  35829634 actca 35829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 683
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    |||||| |||| || |||| ||| ||||||||||   ||||||| |||||    |||   ||||   ||||| ||| ||| |||||| |||||| | |||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct 34828306  T
Q  669 ttcccataacttcat 683  Q
    |||||||||||||||    
T  34828307 ttcccataacttcat 34828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 4e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 2076496 - 2076776
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 2076695  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||    
T  2076696 ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaattttgtatgtcccccttgttcttata 2076776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 20318251 - 20317971
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct 20318052  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||||||| |||||||||||    
T  20318051 ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaattttgtatatcccccttgttcttata 20317971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 469 - 749
Target Start/End: Complemental strand, 24177784 - 24177504
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 24177585  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||    
T  24177584 ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaattttgtatatcccccttgttcttata 24177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 515 - 749
Target Start/End: Original strand, 1288596 - 1288830
Alignment:
Q  515 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 614  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  615 aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 714  Q
    ||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa 1288795  T
Q  715 ttcgcgcaatgatgtatatcccctttgttcttata 749  Q
    ||||| ||||  ||||||||||| |||||||||||    
T  1288796 ttcgcacaattttgtatatcccccttgttcttata 1288830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 472 - 749
Target Start/End: Complemental strand, 27215 - 26939
Alignment:
Q  472 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 571  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  572 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 671  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||   ||||||  ||||   ||||| |||||||| | |||| ||||| ||||  |     
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt 27017  T
Q  672 ccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||  ||||  ||||||||| | |||||||||||    
T  27016 ccatgacttcatggtatgactcattaatttaattcccctataattcgaacaattttgtatatcctccttgttcttata 26939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 714
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  644 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 714  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 469 - 708
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c 666  Q
    | ||||||||| ||||||| || |||||| || || |||||||||||| |   ||| |  |||| ||||||| ||||||||||||||  ||||| ||       
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt 37123633  T
Q  667 ctttcccataacttcatggtatgactcattagcttaattccc 708  Q
     ||| ||||||||||||||||||| |||| || |||| ||||    
T  37123632 tttttccataacttcatggtatgaatcataagtttaactccc 37123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 716
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
Q  643 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 716  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
T  25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 707
Target Start/End: Original strand, 756080 - 756214
Alignment:
Q  573 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 672  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
T  756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
Q  673 cataacttcatggtatgactcattagcttaattcc 707  Q
    ||||||||  ||||| ||||| | || ||||||||    
T  756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 51448731 - 51449011
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51448930  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||    
T  51448931 ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccctcttgttcttata 51449011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 469 - 733
Target Start/End: Complemental strand, 52138088 - 52137824
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||  || |||  ||||| |||||||  || || |||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct 52137889  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatat 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  52137888 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaattttgtatat 52137824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 487 - 749
Target Start/End: Complemental strand, 38849344 - 38849082
Alignment:
Q  487 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 586  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  587 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt 686  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt 38849145  T
Q  687 atgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||| ||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  38849144 atgactcattagtttaattcccttataattcgcgcaattttgtatatcccccttgttcttata 38849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 474 - 750
Target Start/End: Complemental strand, 3369016 - 3368742
Alignment:
Q  474 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 572  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  573 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 672  Q
    || |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||  |||||| ||||||||||||||| ||||| ||  |||||    
T  3368919 taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc 3368820  T
Q  673 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 750  Q
    |||||||||||||||||| | || || |||||||  ||||||||| | ||||  |||||||||   ||||||||||||    
T  3368819 cataacttcatggtatgaattataagtttaattcttctataattcacacaattttgtatatccatcttgttcttataa 3368742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 552 - 724
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
Q  552 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 651  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
T  27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
Q  652 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 724  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
T  27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 539
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  472 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 539  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 542  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 469 - 749
Target Start/End: Original strand, 13280 - 13559
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | |||||||||||| ||||| ||| |    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat 13479  T
Q  669 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 749  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||||||| ||| |||||||||||    
T  13480 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtagttttgtatattccc-ttgttcttata 13559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 469 - 677
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
Q  469 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 568  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  569 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 668  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct 30529  T
Q  669 ttcccataa 677  Q
    |||||||||    
T  30528 ttcccataa 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 487 - 654
Target Start/End: Original strand, 90130 - 90297
Alignment:
Q  487 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 586  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  587 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 654  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 608
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  491 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 590  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  591 agtcgacctcccaggcat 608  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 578
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  515 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 578  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 662
Target Start/End: Original strand, 14931 - 15001
Alignment:
Q  592 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 662  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
T  14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

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Target: scaffold0073 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 750
Target Start/End: Original strand, 20494 - 20608
Alignment:
Q  636 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 735  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  20494 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 20593  T
Q  736 cctttgttcttataa 750  Q
     ||||||||||||||    
T  20594 tctttgttcttataa 20608  T

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