View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_10 (Length: 446)
Name: NF13389_low_10
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 8031545 - 8031975
Alignment:
| Q |
1 |
gtgatttaacctgggttcaatgcgatggacccgatgcaccgtgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttatta |
100 |
Q |
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| T |
8031545 |
gtgatttaacttgggttcaatgcgatggacccgatgcaccgtgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttatta |
8031644 |
T |
|
| Q |
101 |
gttagtactgtttatgaaacacggacacatatacatatattggccacaagacggacac-gtagaaagtattaataatttgaaataatagaagttattgaa |
199 |
Q |
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| T |
8031645 |
gttagtactgtttatgaaacacggacacatatacatatattggccacaagacggacactgtagaaagtaataataatttgaaataatagaagttattgaa |
8031744 |
T |
|
| Q |
200 |
tgcaactgtatttattagtgaaacaccgaaaaatcttcaaagttcatctcagtaagtgttgaactaaataaggatgtcttatgatgattttcactctatt |
299 |
Q |
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| T |
8031745 |
tgcaactatatttattagcgaaacaccgaaaaatcttcaaagttcatctcagtaagtgttgaactaaataaggatgtcttatgatgattttcactctatt |
8031844 |
T |
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| Q |
300 |
tccttacctttgcagcccaaagataaactttataaacctaatggcaaccaacttgtaaaatgttcggatccaatttgtgttgcaacccaatcaacacata |
399 |
Q |
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| T |
8031845 |
tccttacctttgcagcccaaagataaactttataaacctaatggcaaacaagttgtaaaatgttcggatccaatttgtgttgcaacccaatcaacacatg |
8031944 |
T |
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| Q |
400 |
tactaggtcaaatatgttctaagcaaagtcc |
430 |
Q |
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| T |
8031945 |
tactaggtcaaatatgttctaagcaaagtcc |
8031975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 8021783 - 8021911
Alignment:
| Q |
263 |
ctaaataaggatgtcttatgatgattttcactctatttccttacc--------tttgcagcccaaagataaactttataaacctaatggcaaccaacttg |
354 |
Q |
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| T |
8021783 |
ctaaataaggatgtcttatgatgattttcacttaatttccttacctttctacctttgcagcccaaagataaactttataaacctaatggcaatcagcttg |
8021882 |
T |
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| Q |
355 |
taaaatgttcggatccaatttgtgttgca |
383 |
Q |
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| T |
8021883 |
taaaatgttcggatccaatttgtgctgca |
8021911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8021558 - 8021662
Alignment:
| Q |
1 |
gtgatttaacctgggttcaatgcgatggacccgatgcaccgtgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttatta |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
8021558 |
gtgatttaacttgggttcaatgtgatggacccgatgcaccgtgtaaaggttgcactttggtatgttttaaattacaatatattgacatttttagttacta |
8021657 |
T |
|
| Q |
101 |
gttag |
105 |
Q |
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||||| |
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| T |
8021658 |
gttag |
8021662 |
T |
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