View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_12 (Length: 445)
Name: NF13389_low_12
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 141 - 425
Target Start/End: Original strand, 4599892 - 4600179
Alignment:
| Q |
141 |
tcagagtctaagatatgtttattttaaaatggaatgattccaagtaatacaatttgagccttatcctcattgtgacaaagattgatcttgaatcctctca |
240 |
Q |
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| T |
4599892 |
tcagagtctaagatatgtttattttaaaatggaatgattccaagtaatacaatttgagccttatcctcattgtgacaaagattgatcttgaatcctctca |
4599991 |
T |
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| Q |
241 |
ataatcgatgtatactagtctagtcacaactttttgctatgccagaaattaatttgaattattcacaattatgtttagaatctgcagacagcaaat---g |
337 |
Q |
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| T |
4599992 |
ataatcgatgcatactagtctagtcaaaactttttgctatgccagaaattaatttgaattattcacaattatgtttagaatctgcagacagcaaatgtag |
4600091 |
T |
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| Q |
338 |
ttaagttctaactctatcctttagtgaaaaagaaaaagtccaagtcttgtaacatcatttgtaacaccattcatttttaaggtgtcac |
425 |
Q |
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| T |
4600092 |
tcaagttctaactctatcctttagtgaaaaagaaaaagtccaagtcttgtaacatcatttgtaacaccattcatttttaaggtgtcac |
4600179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 4599769 - 4599848
Alignment:
| Q |
18 |
atgaagtatagagaaaatgagaaagggatgagtcaatggtttaataattgagataaaagccaatgtcccttggatttgtg |
97 |
Q |
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| T |
4599769 |
atgaagtatagagaaaatgagaaaggggtatgtcagtggtttaataattgagataaaagccaatgtcccttagatttgtg |
4599848 |
T |
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