View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13389_low_14 (Length: 425)

Name: NF13389_low_14
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13389_low_14
NF13389_low_14
[»] chr6 (3 HSPs)
chr6 (14-415)||(10201624-10202020)
chr6 (262-380)||(7620444-7620556)
chr6 (104-238)||(12241191-12241326)
[»] chr4 (2 HSPs)
chr4 (14-400)||(21211730-21212102)
chr4 (58-317)||(30914803-30915060)
[»] chr7 (4 HSPs)
chr7 (147-398)||(5642953-5643200)
chr7 (147-398)||(5648805-5649052)
chr7 (323-394)||(15080486-15080557)
chr7 (147-238)||(10339884-10339976)
[»] chr2 (2 HSPs)
chr2 (323-399)||(20592527-20592603)
chr2 (223-291)||(19031144-19031212)
[»] chr1 (1 HSPs)
chr1 (53-407)||(16572233-16572580)
[»] scaffold0280 (1 HSPs)
scaffold0280 (352-405)||(4413-4466)
[»] chr5 (1 HSPs)
chr5 (352-405)||(32696791-32696844)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 10201624 - 10202020
Alignment:
Q  14 atcacaaagcatactgtaattaacctaatatatcaccatcatcgtatatcaaagtaaatttgcggaaattaaagataaaggaaaaatataacaccaaatt 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||   |||    
T  10201624 atcacaaagcataccgtaattaacctaatatatcaccatcatcgtttatcaaagtaaatttgcggaaattaaagataaaggaaaaatacaacacttgatt 10201723  T
Q  114 tacagaggttcccttaatcgtcctcgttatgacgtacatcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgttt 213  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  10201724 tacagaggttcccttaatcgtcctcgttatggcgtacatcctctcttcgtagaagagaacgtcttttctataggcttccactagaacgatgaaagtgttt 10201823  T
Q  214 ataggagttattacaaaggttccttcaatatgcaaatcaccatgattttaaatcttctacattgtgtaaccactccaaagactctaatcttcaagcttct 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |    ||||||||||||||    
T  10201824 ataggagttattacaaaggttccttcaatatgc-aatcaccatgattttaaatcttctacactgtgtaaccacttcaaagcc----atcttcaagcttct 10201918  T
Q  314 tgaatttggaattggatgaatcccaagatcttcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgccatgacatccctt 413  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10201919 tgaatttggaattggatgaatcccaaggtcttcaaatcaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgacatgacatccctt 10202018  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 7620556 - 7620444
Alignment:
Q  262 taaatcttctacattgtgtaaccactccaaagactctaatcttcaagcttcttgaatttggaattggatgaatcccaagatcttcaaatgaagctagcat 361  Q
    |||||||| |||| | |||||||||||| | | ||| |||||||||||| ||||||      ||||||||||||| ||||||||   || ||||||||||    
T  7620556 taaatcttttacactatgtaaccactccgatgcctccaatcttcaagctccttgaa------attggatgaatcctaagatcttgggatcaagctagcat 7620463  T
Q  362 gcaatccttcgaacttctt 380  Q
    ||||| |||||| ||||||    
T  7620462 gcaattcttcgatcttctt 7620444  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 12241191 - 12241326
Alignment:
Q  104 acaccaaatttacagaggttcccttaatcgtcctcgttatgacgtacatcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgat 203  Q
    |||||||||||  ||| |||||| |||||||||| | ||| | |||  || ||||||||||||| ||||| | | ||||||| |||||||||| || | |    
T  12241191 acaccaaatttgtagacgttcccctaatcgtcctggctattaagtatgtcatctcttcgtagaataaaacttatcttctacacgcttccactataatgtt 12241290  T
Q  204 gaaagtgtttataggag-ttattacaaaggttcctt 238  Q
    |||| |||||| | |||   ||||||||||||||||    
T  12241291 gaaaatgtttacaagagccaattacaaaggttcctt 12241326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 21212102 - 21211730
Alignment:
Q  14 atcacaaagcatactgtaattaacctaatatatcaccatcatcgtatatcaaagtaaatttgcggaaattaaagataaaggaaaaatataacaccaaatt 113  Q
    |||||||||||||    ||||||||||||  |||| ||||||   |||||||||||||||||| |||||||||||  ||||||||  | |||||   |||    
T  21212102 atcacaaagcatatgacaattaacctaatccatcaacatcat---atatcaaagtaaatttgcagaaattaaagagtaaggaaaag-agaacactggatt 21212007  T
Q  114 tacagaggttcccttaatcgtcctcgttatgacgtaca-tcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgtt 212  Q
    || |||||||||| || ||||||||| |  || |  || ||||||||||||||||||||| | ||  ||||| | |   |||||||| | ||||| ||||    
T  21212006 tatagaggttccccta-tcgtcctcgct--gagggccaatcctctcttcgtagaagaaaatgcctcctctacggaccaacactagaatgttgaaaatgtt 21211910  T
Q  213 tataggagttattacaaaggttccttcaatatgcaaatcaccatgattttaaatcttctacattgtgtaaccactccaaagactctaatcttcaagcttc 312  Q
    || | |||||| |   |||||||||||||| | | ||||||||  ||  |||| |||||||| |||||||||||||||| | ||| |||||||||||| |    
T  21211909 tacaagagttaatt--aaggttccttcaatttacgaatcaccaccatcctaaaccttctacactgtgtaaccactccaatgcctccaatcttcaagctcc 21211812  T
Q  313 ttgaatttggaattggatgaatcccaagatcttcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgc 400  Q
    |||||      ||||||||||||||| | |||||  || |||||||||| ||||||||| | |||||||| |||||||||||||||||    
T  21211811 ttgaa------attggatgaatcccatggtcttcggatcaagctagcatacaatccttcaatcttcttgcccaagaaatcttctttgc 21211730  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 317
Target Start/End: Complemental strand, 30915060 - 30914803
Alignment:
Q  58 tatatcaaagtaaatttgcggaaattaaaga-taaaggaaaaatataacaccaaatttacagaggttcccttaatcgtcctcgttatgacgtacatcctc 156  Q
    ||||||||||||||||||  ||||||||||| |||||||||| || ||||| | ||||| |||  || ||||| ||||||||| || |  ||||||||||    
T  30915060 tatatcaaagtaaatttgttgaaattaaagagtaaaggaaaa-tagaacactagatttatagaaattacctta-tcgtcctcgctaagg-gtacatcctc 30914964  T
Q  157 tcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgtttataggag-ttattacaaaggttccttcaatatgcaaatcacca 255  Q
    |||||||||| ||||| | || |||||| |||||||||||||| | ||||| ||||||   ||| ||||||| ||||||  |||||| | ||||||||||    
T  30914963 tcttcgtagatgaaaatgcctcttctacgggcttccactagaatgttgaaattgtttacgagagtttattac-aaggtttattcaatttacaaatcacca 30914865  T
Q  256 tgattttaaatcttctacattgtgtaaccactccaaagactctaatcttcaagcttcttgaa 317  Q
       ||||||||| |||||||| |||||||||| ||| | ||| ||| |||||||| ||||||    
T  30914864 catttttaaatcgtctacattatgtaaccacttcaatgcctccaatattcaagctccttgaa 30914803  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 398
Target Start/End: Original strand, 5642953 - 5643200
Alignment:
Q  147 gtacatcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgttta-taggagttattacaaaggttccttcaatatg 245  Q
    ||||||| ||| ||||||||| |||| | || |||||| ||||||||||| || | ||||| |||||| ||  |   ||||| ||||||| |||||| |     
T  5642953 gtacatcatctattcgtagaataaaatgcctcttctacgggcttccactataatgttgaaaatgtttactataatcaattaccaaggttctttcaattta 5643052  T
Q  246 caaatcaccatgattttaaatcttctacattgtgtaaccactccaaa-gactctaatcttcaagcttcttgaatttggaattggatgaatcccaagatct 344  Q
    | |||||||| |||| ||||||||||||| ||||||| ||||||||  | ||| || ||||||||| ||||||      ||||||||||||||||| |||    
T  5643053 cgaatcaccacgattctaaatcttctacactgtgtaatcactccaattgcctccaaacttcaagctccttgaa------attggatgaatcccaaggtct 5643146  T
Q  345 tcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttcttt 398  Q
    || ||| |||||||||  |||||| | || |||| | |||||||||||||||||    
T  5643147 tcgaatcaagctagcactcaatccattgatcttcatacgcaagaaatcttcttt 5643200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 398
Target Start/End: Original strand, 5648805 - 5649052
Alignment:
Q  147 gtacatcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgttta-taggagttattacaaaggttccttcaatatg 245  Q
    ||||||| ||| ||||||||| |||| | || |||||| ||||||||||| || | ||||| |||||| ||  |   ||||| ||||||| |||||| |     
T  5648805 gtacatcatctattcgtagaataaaatgcctcttctacgggcttccactataatgttgaaaatgtttactataatcaattaccaaggttctttcaattta 5648904  T
Q  246 caaatcaccatgattttaaatcttctacattgtgtaaccactccaaa-gactctaatcttcaagcttcttgaatttggaattggatgaatcccaagatct 344  Q
    | |||||||| |||| ||||||||||||| ||||||| ||||||||  | ||| || ||||||||| ||||||      ||||||||||||||||| |||    
T  5648905 cgaatcaccacgattctaaatcttctacactgtgtaatcactccaattgcctccaaacttcaagctccttgaa------attggatgaatcccaaggtct 5648998  T
Q  345 tcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttcttt 398  Q
    || ||| |||||||||  |||||| | || |||| | |||||||||||||||||    
T  5648999 tcgaatcaagctagcactcaatccattgatcttcatacgcaagaaatcttcttt 5649052  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 15080486 - 15080557
Alignment:
Q  323 aattggatgaatcccaagatcttcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatctt 394  Q
    ||||||||||||| |||| ||||||||| ||| |||||||||||||||| | |||||| | ||| |||||||    
T  15080486 aattggatgaatctcaaggtcttcaaatcaagatagcatgcaatccttcaaccttcttacccaataaatctt 15080557  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 10339976 - 10339884
Alignment:
Q  147 gtacatcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgtttataggagt-tattacaaaggttcctt 238  Q
    |||||||||||||||||||||||||| | || ||| || ||| |||| || || | ||||| |||||||| ||||  |||| |||||||||||    
T  10339976 gtacatcctctcttcgtagaagaaaatgcctcttcgacgggcatccattacaatgttgaaaatgtttataagagtcaattagaaaggttcctt 10339884  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 20592603 - 20592527
Alignment:
Q  323 aattggatgaatcccaagatcttcaaatgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttg 399  Q
    |||||||||||||| ||| ||||||||| ||| ||||||| |||||||||| |||||| | ||| ||||||||||||    
T  20592603 aattggatgaatccaaaggtcttcaaatcaagatagcatgaaatccttcgatcttcttacccaataaatcttctttg 20592527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 19031144 - 19031212
Alignment:
Q  223 attacaaaggttccttcaatatgcaaatcaccatgattttaaatcttctacattgtgtaaccactccaa 291  Q
    ||||||||||||| | |||| |||||||||||| ||| |||||||||||||||| || || ||||||||    
T  19031144 attacaaaggttcatacaatttgcaaatcaccacgatcttaaatcttctacattatgcaatcactccaa 19031212  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 407
Target Start/End: Original strand, 16572233 - 16572580
Alignment:
Q  53 catcgtatatcaaagtaaatttgcggaaattaaaga-taaaggaaaaatataacaccaaatttacagaggttcccttaatcgtcctcgttatgacgtaca 151  Q
    |||| ||||||||||||||||||  ||||||||||  ||||||||||  | ||| ||||| ||| | |||||||| || ||| ||||| || |  |||||    
T  16572233 catcatatatcaaagtaaatttggagaaattaaagtgtaaaggaaaag-agaacgccaaacttataaaggttcccata-tcgccctcgctaagg-gtaca 16572329  T
Q  152 tcctctcttcgtagaagaaaacgtcttttctacaggcttccactagaacgatgaaagtgttta-taggagttattacaaaggttccttcaatatgcaaat 250  Q
    ||||||||||||||||||||| ||||||||||    |||| ||||||| |  ||||||||||| ||  |   ||||| |||||||||||||| | | |||    
T  16572330 tcctctcttcgtagaagaaaatgtcttttctatgaacttcaactagaatgtcgaaagtgtttactataatgaattac-aaggttccttcaatttacgaat 16572428  T
Q  251 cac-catgattttaaatcttctacattgtgtaaccactccaaagactctaatcttcaagcttcttgaatttggaattggatgaatcccaagatcttcaaa 349  Q
    ||| || |||  ||||||||||||| | || | |||||| || | ||| |||||| ||||   ||||      |||||||||||||||||| |||||  |    
T  16572429 cacgcacgatcctaaatcttctacactatgaagccactcaaatgcctccaatctttaagcccgttga------aattggatgaatcccaaggtcttcgga 16572522  T
Q  350 tgaagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgccatgaca 407  Q
    |  || |||||||||||||||||| |||| ||  |||| |||||||| ||| ||||||    
T  16572523 tcgagatagcatgcaatccttcgaccttcctgaccaaggaatcttctatgctatgaca 16572580  T

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Target: scaffold0280 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 4466 - 4413
Alignment:
Q  352 aagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgccatga 405  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||| ||| ||||    
T  4466 aagctagcatgcaatctttcgatcttcttgtccaagaaatcttctctgctatga 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 32696844 - 32696791
Alignment:
Q  352 aagctagcatgcaatccttcgaacttcttgcgcaagaaatcttctttgccatga 405  Q
    |||||||||||||||||||||| ||||||| |||  || |||||||||| ||||    
T  32696844 aagctagcatgcaatccttcgatcttcttgtgcattaagtcttctttgctatga 32696791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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