View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_16 (Length: 351)
Name: NF13389_low_16
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 2685646 - 2685309
Alignment:
| Q |
1 |
tggtttatgtgacacaaatgcttcacctgtttgtcaatgtgtgaaaggttttagtcctaagaatgaacaagcttggaaattgagagatgggtctgatggg |
100 |
Q |
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| T |
2685646 |
tggtttatgcgacacaaatggttcacctgtttgtcaatgtgtgaaaggttttagtcctaaaaatgaacaagcttggaaattgagagatgggtctgatggg |
2685547 |
T |
|
| Q |
101 |
tgtgtgaggaataagaatttggattgtgagagtgataaatttttacgtatggagaatgtgaagttgcctgagacaagctcagtttttgtgaacaagacaa |
200 |
Q |
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| T |
2685546 |
tgtgtgaggaataagaatttggaatgtgagagtgataaatttttacgtatggagaatgtgaagttgcctgagacaagctcagtttttgtgaacaagacaa |
2685447 |
T |
|
| Q |
201 |
tgggaattaaggaatgtggtgatatgtgtcataggaattgttcttgtactggttatgctaatgtttatgtgactaatggtggaagtggttgtgttatgtg |
300 |
Q |
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| T |
2685446 |
tggggattaaggaatgtggtgatatgtgtcataggaattgttcttgtactggttatgctaatgtttatgtgactaatggtggaagtggttgtgttatgtg |
2685347 |
T |
|
| Q |
301 |
gattggtgaacttaatgatattagagattatcctgatg |
338 |
Q |
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| T |
2685346 |
gattggtgaacttaatgatattagagattatcctgatg |
2685309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 36361434 - 36361761
Alignment:
| Q |
8 |
tgtgacacaaatgcttcacctgtttgtcaatgtgtgaaaggttttagtcctaagaatgaacaagcttggaaattgagagatgggtctgatgggtgtgtga |
107 |
Q |
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| T |
36361434 |
tgtgacacaaatgcttcacctgtttgtaattgtattaaagggtttcgaccaaagaatcatcaagcatggaatttgagagatggatctgatggatgtttga |
36361533 |
T |
|
| Q |
108 |
ggaataagaatttggattgtgagagtgataaatttttacgtatggagaatgtgaagttgcctgagacaagctcagtttttgtgaacaagacaatgggaat |
207 |
Q |
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| T |
36361534 |
ggaataatgagttggattgtgagagtgataagtttttgcatatggtgaatgtgaagttaccagagacaagtagtgtttttgtgaataggagtatgagttt |
36361633 |
T |
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| Q |
208 |
taaggaatgtggtgatatgtgtcataggaattgttcttgtactggttatgctaatgtttatgtgactaatggtggaagtggttgtgttatgtggattggt |
307 |
Q |
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| T |
36361634 |
ggttgaatgtggtgatttgtgtaaaaggaattgttcttgtactggttatgcaaatattgagattgttgatggtggaattggttgtgttatgtggcttgat |
36361733 |
T |
|
| Q |
308 |
gaacttaatgatattagagattatcctg |
335 |
Q |
| |
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||||||| |||||||||| |||||||| |
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| T |
36361734 |
gaacttattgatattagaatttatcctg |
36361761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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