View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_22 (Length: 253)
Name: NF13389_low_22
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 35037774 - 35037998
Alignment:
| Q |
20 |
gaacatattgtaagtttgacgcagtttgtcagttccaccacgtacccgcgtaattaattaataggcaatttcctgctcctcctgactctct--tcagccc |
117 |
Q |
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| T |
35037774 |
gaacatattgtaagtttgacgcagtttgtcagttccaccacgtacccgcgtaattaat----aggcaatttcctgctcctcctgactctctcttcagccc |
35037869 |
T |
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| Q |
118 |
ata------------agccttcctttacgtcctgtgagtttcataactacttgtaaactcatactacatatgattaggaaataaaggcacgagaatactt |
205 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35037870 |
atattccataacataagccttcctttacgtcttgtgagtttcataactacttgtaaactcatactacatatgattaggaaataaaggcacgagaatactt |
35037969 |
T |
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| Q |
206 |
cattggtttcagcttttctttgtttaggc |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35037970 |
cattggtttcagcttttctttgtttaggc |
35037998 |
T |
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