View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13389_low_24 (Length: 225)
Name: NF13389_low_24
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_24 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 27145966 - 27145748
Alignment:
| Q |
7 |
gcttaaatgggatttacttaaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcatttacaatggtgtgtggggttgacttatttagc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27145966 |
gcttaaatgggatttacttaaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcatttacaatggtgtgtgtggttgacttatttagc |
27145867 |
T |
|
| Q |
107 |
atcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgcttaaatggaatttaataac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27145866 |
atcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgcttaaatgggatttaataac |
27145767 |
T |
|
| Q |
207 |
ttttttgaaggtcttagat |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27145766 |
ttttttgaaggtcttagat |
27145748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 38780638 - 38780588
Alignment:
| Q |
26 |
aaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcattt |
76 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
38780638 |
aaaaaccaacacaattcaccccccttcttgtgttttttctcaccttcattt |
38780588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 12397009 - 12396973
Alignment:
| Q |
26 |
aaaaaccaacacaattcaaccatcttcttgtgttttt |
62 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12397009 |
aaaaaccaacacaattcaactatcttcttgtgttttt |
12396973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 11222789 - 11222742
Alignment:
| Q |
26 |
aaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttca |
73 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
11222789 |
aaaagccaacacaattcaacccccttcttgtgttttttctcaccttca |
11222742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 11513611 - 11513575
Alignment:
| Q |
37 |
caattcaaccatcttcttgtgttttttcacaccttca |
73 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
11513611 |
caattcaaccaccttcttgtgttttttctcaccttca |
11513575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University