View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13389_low_4 (Length: 709)

Name: NF13389_low_4
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13389_low_4
NF13389_low_4
[»] chr4 (10 HSPs)
chr4 (16-385)||(46245627-46245996)
chr4 (12-385)||(46021607-46021969)
chr4 (483-637)||(46246108-46246262)
chr4 (454-633)||(46021346-46021538)
chr4 (596-637)||(46020671-46020712)
chr4 (598-637)||(46015439-46015478)
chr4 (104-162)||(46428730-46428786)
chr4 (103-161)||(46303525-46303583)
chr4 (514-547)||(46246080-46246113)
chr4 (596-636)||(41074989-41075029)
[»] chr1 (4 HSPs)
chr1 (596-637)||(3802617-3802658)
chr1 (600-637)||(50668118-50668155)
chr1 (596-637)||(50668580-50668621)
chr1 (597-637)||(3802179-3802219)
[»] scaffold0079 (1 HSPs)
scaffold0079 (596-636)||(6711-6751)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 46245627 - 46245996
Alignment:
Q  16 tcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttattacaaaagcaatgct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46245627 tcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttcaaaagcaatgct 46245726  T
Q  116 aaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatccatctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245727 aaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatccatctg 46245826  T
Q  216 ttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgnnnnnnnnnnnngatgaggcataataaccaaaaacaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  46245827 ttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgaaaaaagaaaaagatgaggcataataaccaaaaacaaaa 46245926  T
Q  316 tagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245927 tagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 46245996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 46021969 - 46021607
Alignment:
Q  12 atcatcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttattacaaaagcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46021969 atcatcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttaaaaagcaa 46021870  T
Q  112 tgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatcca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  46021869 tgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaat------cacacgtatgaggaataggtatcca 46021776  T
Q  212 tctgttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgnnnnnnnnnnnngatgaggcataataaccaaaaac 311  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  46021775 tctgttaaatgttttcaaaaaataaaaaacgaaagggtgagataatttcatatggctgaaacttgaaaaaagaaaaagatgaggcataataaccaaaaac 46021676  T
Q  312 aaaatagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 385  Q
    |||||||||||||     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46021675 aaaatagaagaca-----tcatttaattgctcctcccgtcccaaattataagtcattttctattatacccttca 46021607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 483 - 637
Target Start/End: Original strand, 46246108 - 46246262
Alignment:
Q  483 aaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaagataagcataacctttccaaagtatggcc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246108 aaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaagataagcataacctttccaaagtatggcc 46246207  T
Q  583 gcaataccaagatttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246208 gcaataccaagatttatgtgcatattaacattcaatcaagaggttgcattttcat 46246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 454 - 633
Target Start/End: Complemental strand, 46021538 - 46021346
Alignment:
Q  454 gaacattaattgcatttcttaatctgtcaaaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaa 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46021538 gaacattaattgcatttcttaatctgtcaaaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaa 46021439  T
Q  554 gataagcataacctttccaaagtatggccgcaataccaagat-------------ttatgtgcatattaacattcaatcaagaggttgcattt 633  Q
    ||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  46021438 gataagcataacctttccaaagtatggccgcaataccaagataaacataaccaacttatgtgcatattaacattcaatcaagaggttgcattt 46021346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 46020712 - 46020671
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  46020712 ttatgtgcatattaacactcaatcaagaggttgcattttcat 46020671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 637
Target Start/End: Complemental strand, 46015478 - 46015439
Alignment:
Q  598 atgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  46015478 atgtgcatattaacactcaatcaagaggttgcattttcat 46015439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 46428786 - 46428730
Alignment:
Q  104 aaaagcaatgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaa 162  Q
    |||||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||    
T  46428786 aaaagcaatgcttaaggccaca--aacttagttaagatttccagaagaacttgccttaa 46428730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 46303525 - 46303583
Alignment:
Q  103 caaaagcaatgctaaaggcctcataaacatagttaagatttccagaagaacttgcctta 161  Q
    ||||||||||| |||||||| ||| ||| ||||| |||||||||||||||||| |||||    
T  46303525 caaaagcaatgataaaggccacattaacttagttgagatttccagaagaacttccctta 46303583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 547
Target Start/End: Original strand, 46246080 - 46246113
Alignment:
Q  514 ttaaatgagctgaatttctaaagtatggaaacaa 547  Q
    ||||||||||||||||||||||||||||||||||    
T  46246080 ttaaatgagctgaatttctaaagtatggaaacaa 46246113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 596 - 636
Target Start/End: Complemental strand, 41075029 - 41074989
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttca 636  Q
    ||||||||||||||||| ||||||||||| | |||||||||    
T  41075029 ttatgtgcatattaacactcaatcaagagctagcattttca 41074989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 596 - 637
Target Start/End: Original strand, 3802617 - 3802658
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3802617 ttatgtgcatattaacactcaatcaagaggttgcattttcat 3802658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 637
Target Start/End: Complemental strand, 50668155 - 50668118
Alignment:
Q  600 gtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  50668155 gtgcatattaacattcaattaagagcttgcattttcat 50668118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 50668621 - 50668580
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  50668621 ttatgtgcatattaacactcgatcaagagcttgcattttcat 50668580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 637
Target Start/End: Original strand, 3802179 - 3802219
Alignment:
Q  597 tatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    |||||||||||||||| |||| |||||||||| ||||||||    
T  3802179 tatgtgcatattaacactcaaacaagaggttgtattttcat 3802219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 596 - 636
Target Start/End: Original strand, 6711 - 6751
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttca 636  Q
    ||||||||||||||||| ||||||||||| | |||||||||    
T  6711 ttatgtgcatattaacactcaatcaagagctagcattttca 6751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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