View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13389_low_5 (Length: 707)

Name: NF13389_low_5
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13389_low_5
NF13389_low_5
[»] chr5 (21 HSPs)
chr5 (16-672)||(14820297-14820928)
chr5 (384-554)||(19343551-19343721)
chr5 (384-533)||(39058477-39058626)
chr5 (384-554)||(26724110-26724281)
chr5 (406-534)||(38948544-38948672)
chr5 (384-545)||(5159485-5159646)
chr5 (377-554)||(36235746-36235923)
chr5 (394-554)||(16089694-16089854)
chr5 (377-435)||(5459043-5459101)
chr5 (467-543)||(15070000-15070076)
chr5 (384-512)||(38607295-38607423)
chr5 (384-483)||(21114568-21114667)
chr5 (474-549)||(30403572-30403647)
chr5 (500-554)||(6502282-6502336)
chr5 (384-450)||(15069930-15069996)
chr5 (436-536)||(22860975-22861072)
chr5 (406-447)||(4294818-4294859)
chr5 (425-554)||(5459137-5459265)
chr5 (384-437)||(16089653-16089706)
chr5 (384-440)||(1298894-1298950)
chr5 (589-617)||(15070125-15070153)
[»] chr8 (24 HSPs)
chr8 (384-543)||(39344582-39344741)
chr8 (384-554)||(12596853-12597023)
chr8 (384-543)||(24916049-24916206)
chr8 (384-529)||(26938628-26938773)
chr8 (384-543)||(26938876-26939032)
chr8 (432-554)||(32796980-32797102)
chr8 (406-554)||(10467482-10467631)
chr8 (384-532)||(33038214-33038362)
chr8 (384-554)||(42023985-42024154)
chr8 (384-547)||(17156980-17157146)
chr8 (384-499)||(17153537-17153652)
chr8 (384-543)||(17219713-17219875)
chr8 (384-535)||(24292198-24292349)
chr8 (386-490)||(16483745-16483848)
chr8 (384-504)||(8026016-8026136)
chr8 (384-440)||(8026216-8026272)
chr8 (415-490)||(30743922-30743997)
chr8 (424-470)||(2414910-2414956)
chr8 (384-483)||(43651359-43651458)
chr8 (407-457)||(41828016-41828066)
chr8 (373-410)||(41590719-41590756)
chr8 (384-444)||(12911025-12911085)
chr8 (384-468)||(26736027-26736111)
chr8 (384-440)||(26938540-26938596)
[»] chr6 (17 HSPs)
chr6 (384-535)||(10516588-10516738)
chr6 (384-529)||(3807068-3807213)
chr6 (384-554)||(6197810-6197979)
chr6 (384-554)||(17957029-17957199)
chr6 (387-514)||(3336025-3336152)
chr6 (384-490)||(25042897-25043002)
chr6 (384-490)||(4405838-4405943)
chr6 (454-554)||(4254536-4254636)
chr6 (384-492)||(12611794-12611902)
chr6 (384-507)||(24672269-24672392)
chr6 (392-515)||(30465195-30465318)
chr6 (494-554)||(14198537-14198597)
chr6 (387-470)||(4409537-4409619)
chr6 (384-483)||(10311637-10311736)
chr6 (407-458)||(17141881-17141932)
chr6 (592-626)||(34187672-34187706)
chr6 (494-554)||(14897305-14897365)
[»] chr4 (18 HSPs)
chr4 (384-562)||(6449661-6449839)
chr4 (379-554)||(40390884-40391058)
chr4 (392-563)||(15025785-15025955)
chr4 (375-492)||(10573942-10574059)
chr4 (406-510)||(6156049-6156152)
chr4 (384-463)||(15882221-15882300)
chr4 (388-554)||(38377811-38377964)
chr4 (384-543)||(31049984-31050144)
chr4 (384-444)||(40391085-40391145)
chr4 (380-438)||(784192-784250)
chr4 (589-626)||(38377820-38377857)
chr4 (384-440)||(784000-784056)
chr4 (474-554)||(784088-784168)
chr4 (494-554)||(14806451-14806511)
chr4 (384-507)||(22593330-22593453)
chr4 (415-516)||(26081196-26081297)
chr4 (384-441)||(43914042-43914099)
chr4 (593-625)||(47472199-47472231)
[»] chr3 (16 HSPs)
chr3 (384-554)||(34359330-34359500)
chr3 (374-554)||(39340760-39340938)
chr3 (384-554)||(50334632-50334804)
chr3 (384-554)||(44446851-44447021)
chr3 (434-553)||(45743779-45743898)
chr3 (384-554)||(28769505-28769673)
chr3 (384-504)||(20336780-20336900)
chr3 (376-485)||(13899456-13899564)
chr3 (384-515)||(20314887-20315018)
chr3 (436-563)||(22853361-22853489)
chr3 (402-511)||(17268848-17268957)
chr3 (384-483)||(9766052-9766151)
chr3 (438-504)||(16876437-16876503)
chr3 (494-554)||(16607176-16607236)
chr3 (384-444)||(43545340-43545400)
chr3 (384-440)||(52423195-52423251)
[»] chr1 (15 HSPs)
chr1 (387-554)||(20985930-20986099)
chr1 (384-554)||(33752959-33753128)
chr1 (384-532)||(50919301-50919448)
chr1 (384-550)||(16545413-16545578)
chr1 (406-510)||(13392831-13392935)
chr1 (384-510)||(25506585-25506709)
chr1 (387-483)||(29307657-29307753)
chr1 (476-543)||(37470916-37470983)
chr1 (380-431)||(16545318-16545369)
chr1 (390-480)||(3891451-3891541)
chr1 (384-431)||(1236708-1236755)
chr1 (391-481)||(37471004-37471094)
chr1 (384-413)||(23278793-23278822)
chr1 (403-504)||(29102855-29102956)
chr1 (384-444)||(35218058-35218118)
[»] chr2 (23 HSPs)
chr2 (384-554)||(34904010-34904180)
chr2 (389-520)||(6191094-6191225)
chr2 (406-535)||(855586-855715)
chr2 (384-543)||(35954224-35954383)
chr2 (388-554)||(31994722-31994888)
chr2 (388-543)||(8794580-8794731)
chr2 (384-543)||(30641034-30641194)
chr2 (384-554)||(27694513-27694683)
chr2 (384-554)||(39293110-39293279)
chr2 (406-543)||(10077626-10077764)
chr2 (384-488)||(24490617-24490721)
chr2 (384-534)||(29242582-29242730)
chr2 (414-499)||(30632591-30632676)
chr2 (414-499)||(30669060-30669145)
chr2 (385-486)||(36773985-36774085)
chr2 (384-445)||(37284290-37284351)
chr2 (384-543)||(434530-434690)
chr2 (494-554)||(21595025-21595085)
chr2 (384-445)||(11711255-11711316)
chr2 (384-445)||(17448896-17448957)
chr2 (485-562)||(33912690-33912766)
chr2 (384-445)||(43910163-43910224)
chr2 (384-432)||(14201328-14201376)
[»] chr7 (14 HSPs)
chr7 (384-543)||(25067651-25067810)
chr7 (384-554)||(27567663-27567835)
chr7 (384-543)||(11297757-11297917)
chr7 (389-489)||(34471227-34471327)
chr7 (384-554)||(20132053-20132223)
chr7 (406-554)||(28098553-28098700)
chr7 (438-540)||(13009377-13009480)
chr7 (392-515)||(30851674-30851797)
chr7 (418-554)||(12925246-12925382)
chr7 (384-470)||(21367169-21367255)
chr7 (424-515)||(28565079-28565170)
chr7 (384-458)||(28555280-28555354)
chr7 (384-454)||(28545217-28545287)
chr7 (592-620)||(38487338-38487366)
[»] scaffold0720 (1 HSPs)
scaffold0720 (384-515)||(5503-5634)
[»] scaffold0020 (1 HSPs)
scaffold0020 (384-543)||(152180-152339)
[»] scaffold0233 (1 HSPs)
scaffold0233 (377-554)||(16922-17099)
[»] scaffold0005 (2 HSPs)
scaffold0005 (389-554)||(253745-253909)
scaffold0005 (494-554)||(33216-33276)
[»] scaffold0478 (2 HSPs)
scaffold0478 (384-499)||(8599-8714)
scaffold0478 (384-463)||(3221-3300)
[»] scaffold1911 (1 HSPs)
scaffold1911 (406-499)||(2-95)
[»] scaffold0264 (1 HSPs)
scaffold0264 (406-491)||(19788-19873)
[»] scaffold0002 (2 HSPs)
scaffold0002 (418-554)||(363071-363207)
scaffold0002 (494-554)||(360544-360604)


Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Complemental strand, 14820928 - 14820297
Alignment:
Q  16 catatatgcaaagcacacatgaaaaggataaagaaagcgaaatgtgagttaatagcagcattgggtttgttattgacactactttcttatctctatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820928 catatatgcaaagcacacatgaaaaggataaagaaagcgaaatgtgagttaatagcagcattgggtttgttattgacactactttcttatctctatattt 14820829  T
Q  116 ggtgtcaatctgaatgaatagtttgttacattgttcttaagccacaagtaaagatgaagaagataaatctttcctcccaatgtaggataaacattatccg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14820828 ggtgtcaatctgaatgaatagtttgttacattgttcttaagccacaagtaaagatgaagaagataaatcttttctcccaatgtaggataaacattatccg 14820729  T
Q  216 agtaaaaagaatacttgtgaatgtgatttgacgccatgtcaaatatttgtcttgtaatgcaattgatgatagatgtttgtatttgcattttgaaggtaaa 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14820728 agtaaaaagaatacttgtgaatgtgatttgacgccatgccaaatatttgtcttgtaatgcaattgatgatagatgtttctatttgcattttgaaggtaaa 14820629  T
Q  316 tcccgtttgtgtcaattaatagattttgatatctcaattgagatagattaatataattaataaaagggtaaatatgtttttagttcctataaaatcataa 415  Q
    |||||||||||||||||||||||||||||||               |||||||        |||||| ||||||||||||||||||||||||||||||||    
T  14820628 tcccgtttgtgtcaattaatagattttgata---------------attaata--------aaaagg-taaatatgtttttagttcctataaaatcataa 14820553  T
Q  416 gtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaa 515  Q
    ||||| || |||||||| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |||    
T  14820552 gttttcaagtttagtccttacaaaattttagtggtaattttaaccctctataataatgtagtttgtaaaaataatccatattttaaaaactttttataaa 14820453  T
Q  516 taatggacacttttagtccttcaaaataatccttataaatataaatagagaagaaaggtgannnnnnnnnngcagggactaaacttaaaaatttgtaatt 615  Q
     ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||           || ||||||||||| |||||||||||||    
T  14820452 aaatggtcacttttagtccttcaaaatagtccttataaatataaatagagaagaaaggtgatttttttttt-catggactaaacttgaaaatttgtaatt 14820354  T
Q  616 ttgtaaggactnnnnnnntatttaactcttaataaaataactgtagtattatttatg 672  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  14820353 ttgtaaggactaaaaaaatatttaactcttaataaaataactgtagtattatttatg 14820297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 19343551 - 19343721
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||| || |||||| |||  | |||| ||||||||||||    
T  19343551 taaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgtaa 19343650  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||| |||| || ||||||||||    
T  19343651 aaatagttcatattttaaaaactttttacaaaaaatagataattttagtcctccaaactagtccttataaa 19343721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 384 - 533
Target Start/End: Complemental strand, 39058626 - 39058477
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | |||||||||||| |||||||||| ||||  ||||||||||||||| ||||| |||||| |||| |||| | ||||||||||||    
T  39058626 taaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagtttgtaa 39058527  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtc 533  Q
     |||||| | |||||| ||||||||||||||| |||||||||||||||||    
T  39058526 gaatagtccttattttgaaaactttttacaaacaatggacacttttagtc 39058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 26724110 - 26724281
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||  ||||||  | ||||||||||||||||||||| ||||| |||||| | || |||  | |||| ||| |||    
T  26724110 taaatatgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtcgtccatagaattgtaatttataa 26724209  T
Q  484 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     || ||| | |||||| |||||||||||| ||| |||||| |||||||||||| ||||||| ||||||||||    
T  26724210 gaacagtccctattttgaaaactttttacaaaaaaatggatacttttagtcctccaaaatagtccttataaa 26724281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 406 - 534
Target Start/End: Original strand, 38948544 - 38948672
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    ||||||| ||||||| || |||||||  |||||||||||| || || |||||| |||  |||||   ||||||| ||| | |||||||||||||||||||    
T  38948544 aaaatcacaagttttcaaatttagtctatataaaattttaatgataattttagtccttcataatttagtagtttataagattagttcatattttaaaaac 38948643  T
Q  506 tttttacaaataatggacacttttagtcc 534  Q
    |||||||||| ||||||||||||||||||    
T  38948644 tttttacaaaaaatggacacttttagtcc 38948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 384 - 545
Target Start/End: Complemental strand, 5159646 - 5159485
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||| ||||||||||| ||||  ||||||| ||||||||  ||||||| ||||||||||||| | ||| |||||  |||  | | || | |||||| |||    
T  5159646 taaaaatgtttttagtccctaccaaatcatgagtttttaggtttagtctctataaaattttaatagtaattttaatcctaaaaattattatagtttctaa 5159547  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataat 545  Q
    ||||||| | |||||||||||||||| ||||| |||||| |||| ||||||| |||||||||    
T  5159546 aaatagtccttattttaaaaacttttaacaaaaaatggatacttgtagtcctccaaaataat 5159485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 554
Target Start/End: Original strand, 36235746 - 36235923
Alignment:
Q  377 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtag 476  Q
    |||||| |||||||||| |||||   |  ||||| || |||||| || |||| | ||||||||||||||  |||| ||||||||||| |||||| | |||    
T  36235746 aaaaggttaaatatgttcttagtctatgcaaaattatgagttttcaaatttaattcctataaaattttaagggtaattttagccctccataatattttag 36235845  T
Q  477 tttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||||||| || ||| |  ||||||||||||||||| ||| |||| | | ||||| |||| ||||||| ||||||||||    
T  36235846 tttgtaagaacagtccccattttaaaaactttttataaaaaatgaatatttttattcctccaaaatagtccttataaa 36235923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 554
Target Start/End: Original strand, 16089694 - 16089854
Alignment:
Q  394 tttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttca 493  Q
    |||||| |||||| | | || ||||||||| ||||||||| ||||||||||| | ||| |||||| |||  | |||| | |||||||||| ||||||       
T  16089694 tttagtccctatatagttatgagtttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaatagtctc 16089793  T
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    | |||| ||||||||||||||| |||||  ||||||||||||  |||||| ||| ||||||    
T  16089794 tgtttttaaaactttttacaaaaaatgggtacttttagtcctctaaaatagtccctataaa 16089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 5459043 - 5459101
Alignment:
Q  377 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtcccta 435  Q
    |||||| ||||||||||||||||  ||||||||| |||||||||||| |||||||||||    
T  5459043 aaaaggttaaatatgtttttagtctctataaaattataagtttttaagtttagtcccta 5459101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 543
Target Start/End: Original strand, 15070000 - 15070076
Alignment:
Q  467 aataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    |||| |||||||||||| ||||||    ||||| ||||||||||||||| |||||| | ||||||||||||||||||    
T  15070000 aatattgtagtttgtaataatagtctcgattttgaaaactttttacaaaaaatggatatttttagtccttcaaaata 15070076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 512
Target Start/End: Original strand, 38607295 - 38607423
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | |||| ||| |||  ||||||||| ||||||  ||||||||||||| | ||| |||||| |||  |||||| |||||||| | |    
T  38607295 taaatatgtttttaatacctaaaaactcaagagtttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagtttttta 38607394  T
Q  484 aaatagttcatattttaaaaactttttac 512  Q
     |||||| | |||||| ||||||| ||||    
T  38607395 gaatagtccttattttgaaaacttgttac 38607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 21114568 - 21114667
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||||||||  ||||||||||| ||  |||||| ||||||  ||| ||||||||| || || |||||| || | |||||| ||||||||||||    
T  21114568 taaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccataatattgtagtttgtaa 21114667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 474 - 549
Target Start/End: Complemental strand, 30403647 - 30403572
Alignment:
Q  474 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatcctt 549  Q
    |||||||||| ||||||   |||||||||||||||||||||| ||||| ||| |||||| || ||||||| |||||    
T  30403647 tagtttgtaagaatagtcattattttaaaaactttttacaaaaaatgggcacatttagtactccaaaatagtcctt 30403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 554
Target Start/End: Original strand, 6502282 - 6502336
Alignment:
Q  500 aaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||||||||||||| | |||| |||||||||||| ||||||| ||| ||||||    
T  6502282 aaaaactttttacaaaaattggatacttttagtcctccaaaatagtccctataaa 6502336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 450
Target Start/End: Original strand, 15069930 - 15069996
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggt 450  Q
    ||||||||||||||   |||| |||||||| ||||||||  |||||||||| |||||||||| ||||    
T  15069930 taaatatgtttttatgccctacaaaatcatgagtttttatgtttagtccctgtaaaattttaatggt 15069996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 536
Target Start/End: Complemental strand, 22861072 - 22860975
Alignment:
Q  436 taaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 535  Q
    |||||||||| | ||| |||||| |||||||| || |||||||||| | |||   || ||||||||||| |||||||||| |||||| |  |||||||||    
T  22861072 taaaattttaattgtaattttagtcctctatagtattgtagtttgttataat---tcctattttaaaaagtttttacaaaaaatggatatatttagtcct 22860976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 4294818 - 4294859
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagt 447  Q
    |||||||||| ||||||| |||||||| ||||||||||||||    
T  4294818 aaaatcataaatttttaagtttagtccttataaaattttagt 4294859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 554
Target Start/End: Complemental strand, 5459265 - 5459137
Alignment:
Q  425 tttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggaca 524  Q
    ||||||||||||||||||||| |||||  ||||| |||  |||||| | |||||| ||| ||| || | ||||||  ||| ||| |||||| |||| | |    
T  5459265 tttagtccctataaaattttaatggtaaatttagtccttcataatattatagtttataagaat-gtccctattttttaaattttctacaaaaaatgaata 5459167  T
Q  525 cttttagtccttcaaaataatccttataaa 554  Q
    |||||| |||| ||||||| ||| ||||||    
T  5459166 cttttattcctccaaaatagtccctataaa 5459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 16089653 - 16089706
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctata 437  Q
    |||||||||||||||| |||||| | | || ||||||||| |||||||||||||    
T  16089653 taaatatgtttttagtccctatatagttatgagtttttaagtttagtccctata 16089706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 1298950 - 1298894
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 440  Q
    |||||||||||||||| |||| ||||| | ||| |||||| ||||||||||| ||||    
T  1298950 taaatatgtttttagtccctacaaaattacaagcttttaaatttagtccctacaaaa 1298894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 15070125 - 15070153
Alignment:
Q  589 agggactaaacttaaaaatttgtaatttt 617  Q
    |||||||||||||||||||||||||||||    
T  15070125 agggactaaacttaaaaatttgtaatttt 15070153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 39344582 - 39344741
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||| |||||||||| || |||||||||| ||||||| || |||||||||||||||||| |||||  ||||| |||| |||||| ||||||||||||    
T  39344582 taaatatatttttagttcatacaaaatcataaatttttaaattaagtccctataaaattttaatggtaactttagtcctccataatattgtagtttgtaa 39344681  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
     ||||||||||||||| ||||| ||||| ||| | ||||||||||||||||| |||||||    
T  39344682 gaatagttcatattttgaaaaccttttaaaaaaattggacacttttagtcctccaaaata 39344741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 12596853 - 12597023
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||| | |||| ||||||||||||    
T  12596853 taaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaa 12596952  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    || ||||   |||||| ||||| ||||||||| |||||| |  ||||||||| ||||||| ||| ||||||    
T  12596953 aattagtctctattttgaaaacattttacaaaaaatggatatatttagtcctccaaaatagtccctataaa 12597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 24916206 - 24916049
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||| | |||| | ||| |||||||||||||    
T  24916206 taaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaat-atgtagtttgtaa 24916108  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    |||||| || ||||||  |||||||||| ||| |||||| | |||||||||| |||||||    
T  24916107 aaatag-tcctattttggaaactttttagaaaaaatggatatttttagtcctccaaaata 24916049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 529
Target Start/End: Complemental strand, 26938773 - 26938628
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| | |||| |||||   |||||||||||    
T  26938773 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaa 26938674  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacactttt 529  Q
     |||||| | |||||| ||||||||||  ||| |||||||||||||    
T  26938673 gaatagtccctattttgaaaacttttttgaaaaaatggacactttt 26938628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 26939032 - 26938876
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||| |||| |||||   ||  |||||||    
T  26939032 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatttagt--tttgtaa 26938935  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
     |||||| | |||||| ||||||||||  | | |||||||||||||||||||||||||||    
T  26938934 gaatagtccctattttgaaaacttttt-tataaaatggacacttttagtccttcaaaata 26938876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 554
Target Start/End: Original strand, 32796980 - 32797102
Alignment:
Q  432 cctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttag 531  Q
    |||||||| ||||| | ||| |||||| |||||| | || |||||||||||| |||||| |||||||||||||||||||||||| ||| || |||||| |    
T  32796980 cctataaatttttaatagtaattttagtcctctaaagtattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaatagatacttttgg 32797079  T
Q  532 tccttcaaaataatccttataaa 554  Q
    |||| ||||||| ||||||||||    
T  32797080 tcctccaaaatagtccttataaa 32797102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 554
Target Start/End: Complemental strand, 10467631 - 10467482
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    ||||||| || ||||||| |||| ||| |||||||||||| ||||| |||||  |||| |||||| ||||  |||||| |||||| | |||||| |||||    
T  10467631 aaaatcacaaatttttaagtttattccttataaaattttaatggtaattttaatcctccataatattgtaacttgtaagaatagtccctattttgaaaac 10467532  T
Q  506 tttttac-aaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||    
T  10467531 tttttacaaaaaaatggacacttttagtcctccaaaatagtccctataaa 10467482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 384 - 532
Target Start/End: Original strand, 33038214 - 33038362
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||| ||||||||||| |||| |||| ||| |  |||||| |||||| ||||| |||||||| ||  | |||||  |||| |||||| || |||||||||    
T  33038214 taaaaatgtttttagtccctacaaaaacatcaacttttaagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaa 33038313  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagt 532  Q
     |||||||| |||||||||||||||||||| | |||||| |||||||||    
T  33038314 gaatagttcctattttaaaaactttttacagaaaatggatacttttagt 33038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 42024154 - 42023985
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||| |||||| | || |||||||  ||||||| | ||||||||| ||||||||||| || || |||||| |||| | |||| ||||| ||||||    
T  42024154 taaatatgtgtttagtccttacaaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcctccaaaatattgtag-ttgtaa 42024056  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     |||||| | ||||| |||  |||||||||||  ||| |||||||||||||| ||||||| ||| ||||||    
T  42024055 taatagtccctatttaaaattctttttacaaaatatgtacacttttagtcctccaaaatagtccatataaa 42023985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 547
Target Start/End: Complemental strand, 17157146 - 17156980
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| | |||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| | |||||||| |    
T  17157146 taaatatgtttttagtccctacaaaatcatgattttttaaacttagtccctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtta 17157047  T
Q  484 aaatagttcatattttaaaaacttttta---caaataatggacacttttagtccttcaaaataatcc 547  Q
    ||||||  | |||||| |||||| | ||    ||| |||||| |||||||||||| ||| |||||||    
T  17157046 aaatagcccctattttgaaaactatatatacaaaaaaatggatacttttagtcctccaagataatcc 17156980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 384 - 499
Target Start/End: Original strand, 17153537 - 17153652
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| |  ||||||| |    
T  17153537 taaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgtta 17153636  T
Q  484 aaatagttcatatttt 499  Q
    ||||||| | ||||||    
T  17153637 aaatagtccctatttt 17153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 17219875 - 17219713
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaatt--ttagtccctataaaattttagtggtatttttagccct-ctataataatgtagtttg 480  Q
    ||||||||||||||||  ||| |||||||| || ||||||    ||||||||||| |||||||| ||||| |||||| ||| ||| |||| | |||||||    
T  17219875 taaatatgtttttagtctctacaaaatcatgagattttaagcgcttagtccctatgaaattttaatggtaattttagtccttcta-aatattttagtttg 17219777  T
Q  481 taaaaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 543  Q
    |||||||||| | |||||| |||||||| ||| ||| |||||| | |||||||||| |||||||    
T  17219776 taaaaatagtccctattttgaaaactttatacaaaaaaatggatatttttagtcctccaaaata 17219713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 535
Target Start/End: Complemental strand, 24292349 - 24292198
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||| |||||||||| |||| ||||||| ||| ||| || |||||||||||| |||||||| | ||| |||||| |||  |||| | ||  ||||||||    
T  24292349 taaatgtgtttttagtccctaaaaaatcacaagctttcaagtttagtccctattaaattttaattgtaattttagtccttcataaaattgatgtttgtaa 24292250  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 535  Q
     || ||| | ||||||||||  |||||| ||| |||||| ||||||||||||    
T  24292249 gaacagtccctattttaaaagatttttataaaaaatggatacttttagtcct 24292198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 16483745 - 16483848
Alignment:
Q  386 aatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaa 485  Q
    |||||||||| | | |||| | |||||| ||||||||| |||||||||| |||||||||| ||||| |||||| | || | |||| ||||||||||||||    
T  16483745 aatatgttttcaatccctacagaatcatgagtttttaagtttagtccctgtaaaattttaatggtaattttagtcttcaa-aatattgtagtttgtaaaa 16483843  T
Q  486 atagt 490  Q
    |||||    
T  16483844 atagt 16483848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 504
Target Start/End: Original strand, 8026016 - 8026136
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||| |||| |||||||||| | || |||| || |||| || ||||||||||||| ||||  || ||| |||| |||||   |||||||||||    
T  8026016 taaatatgtttatagtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgtaa 8026115  T
Q  484 aaatagttcatattttaaaaa 504  Q
     |||||| | |||||||||||    
T  8026116 gaatagtccctattttaaaaa 8026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 8026272 - 8026216
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 440  Q
    ||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||    
T  8026272 taaatatgtatttagtccctacaaaattataagtttttaagtttagtccctataaaa 8026216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 30743922 - 30743997
Alignment:
Q  415 agtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagt 490  Q
    |||||| || |||||| ||||||||| |||| || || |||||| |||| |||||| |||||||||||||||||||    
T  30743922 agttttcaaatttagtacctataaaactttaatgttaattttagtcctcaataatattgtagtttgtaaaaatagt 30743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 470
Target Start/End: Original strand, 2414910 - 2414956
Alignment:
Q  424 ttttagtccctataaaattttagtggtatttttagccctctataata 470  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  2414910 ttttagtccctataaaattttaatggtaattttagtcctctataata 2414956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 43651359 - 43651458
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||||||||  ||||||||||| ||  |||||| ||||||  ||| ||||||||| || || |||||| || | | |||| ||||||||||||    
T  43651359 taaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccacaatattgtagtttgtaa 43651458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 41828016 - 41828066
Alignment:
Q  407 aaatcataagtttttaattttagtccctataaaattttagtggtattttta 457  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| |||||    
T  41828016 aaatcataagtttttaagtttagtcgatataaaattttaatggtaatttta 41828066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 41590756 - 41590719
Alignment:
Q  373 taataaaagggtaaatatgtttttagttcctataaaat 410  Q
    ||||||| || |||||||||||||||||||||||||||    
T  41590756 taataaagggttaaatatgtttttagttcctataaaat 41590719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 12911085 - 12911025
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 444  Q
    ||||||| |||||||  | || |||| ||| ||||||||| ||||||||||||||||||||    
T  12911085 taaatatatttttagcccttacaaaaccattagtttttaagtttagtccctataaaatttt 12911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 26736111 - 26736027
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataa 468  Q
    |||||||||||||||||| || |||||||| |||| |||  ||||||  ||||||| ||||| || || ||||||  ||||||||    
T  26736111 taaatatgtttttagttcatacaaaatcatgagttattaggtttagtttctataaacttttaatgataattttagttctctataa 26736027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 26938540 - 26938596
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 440  Q
    |||||||||||||||| |||| ||||| | ||| |||||| ||||||||||| ||||    
T  26938540 taaatatgtttttagtccctacaaaattacaagcttttaagtttagtccctacaaaa 26938596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 384 - 535
Target Start/End: Complemental strand, 10516738 - 10516588
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| || || || ||||||||||| |||||| ||||||||||||    
T  10516738 taaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttgtaa 10516639  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 535  Q
     |||||| | || ||||| |||||||||||||  ||||| ||||||||||||    
T  10516638 gaatagtcccta-tttaataactttttacaaaatatggatacttttagtcct 10516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 529
Target Start/End: Original strand, 3807068 - 3807213
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||| ||||| |||| | |||| |||||   |||||||||||    
T  3807068 taaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgtaa 3807167  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacactttt 529  Q
     |||||| | |||||| ||||||||| ||||| ||| |||||||||    
T  3807168 gaatagtccctattttgaaaacttttaacaaaaaatagacactttt 3807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 6197810 - 6197979
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||||||||||| || |||| || |||||||| |||||||||||| |||||  ||||| |||| |||||   |||||||||||    
T  6197810 taaatatgtttttagtccctataaaatcacaa-ttttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagtttgtaa 6197908  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||||||   |||||| ||||||||||| ||| |||||||||||||| |||| ||||||| ||| ||||||    
T  6197909 gaatagtctctattttgaaaactttttagaaaaaatggacacttttattcctccaaaatagtccctataaa 6197979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 17957029 - 17957199
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||||| ||| || ||||||||| |||||| || ||||||||||| | ||| |||||| |||  | |||| | ||||||||||    
T  17957029 taaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaa 17957128  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||||||   | |||| ||||||||||||||| |||||| || ||||||||| ||||||| ||| ||||||    
T  17957129 gaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaa 17957199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 387 - 514
Target Start/End: Complemental strand, 3336152 - 3336025
Alignment:
Q  387 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaa 486  Q
    ||||||||||| | | || |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| |||||| |||| |||| ||||||  ||    
T  3336152 atatgtttttaatccttacaaaatcataaatttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaa 3336053  T
Q  487 tagttcatattttaaaaactttttacaa 514  Q
    |||||  |||| | ||||||||||||||    
T  3336052 tagttgttattctgaaaactttttacaa 3336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 490
Target Start/End: Complemental strand, 25043002 - 25042897
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| |||||| || |||||||| |||||||||||| ||||| |||||| ||||| | ||| ||||||||||||    
T  25043002 taaatatgtttttagtccctacaaaatcatgagttttcaaatttagtcc-tataaaattttaatggtaattttagtcctctgtgatattgtagtttgtaa 25042904  T
Q  484 aaatagt 490  Q
     ||||||    
T  25042903 gaatagt 25042897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 384 - 490
Target Start/End: Complemental strand, 4405943 - 4405838
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||| ||||| ||||   |||| |||||| | || |||||||    
T  4405943 taaatatgtttttagt-cctacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttttatcctccataatattctactttgtaa 4405845  T
Q  484 aaatagt 490  Q
     ||||||    
T  4405844 gaatagt 4405838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 4254636 - 4254536
Alignment:
Q  454 tttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataa 553  Q
    ||||| |||| | |||| ||||||||||||||||| | | ||||||||||||| |||||||| ||||||||||||||  ||| ||||||| ||||| |||    
T  4254636 tttagtcctcaaaaatactgtagtttgtaaaaataatccctattttaaaaactgtttacaaaaaatggacacttttaaccctccaaaatagtccttgtaa 4254537  T
Q  554 a 554  Q
    |    
T  4254536 a 4254536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 492
Target Start/End: Original strand, 12611794 - 12611902
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| | ||||||| |||| ||||| |||||||||| ||||| |||||| |||| |||| | | |||||| |||    
T  12611794 taaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttataa 12611893  T
Q  484 aaatagttc 492  Q
     ||||||||    
T  12611894 gaatagttc 12611902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 507
Target Start/End: Original strand, 24672269 - 24672392
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| |  ||| ||| |||  | |||| || ||||||||||||||||||||| ||||| |||||| |||| |||||| |||| |||||||    
T  24672269 taaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttgtaa 24672368  T
Q  484 aaatagttcatattttaaaaactt 507  Q
     ||||||   ||||||||||||||    
T  24672369 taatagtctctattttaaaaactt 24672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 392 - 515
Target Start/End: Complemental strand, 30465318 - 30465195
Alignment:
Q  392 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 491  Q
    |||||||| |||||||||| |  |||||| || |||||  |||||||||||||| ||||| ||||||   || |||||| || ||||||||| ||||||     
T  30465318 tttttagtccctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtc 30465219  T
Q  492 catattttaaaaactttttacaaa 515  Q
    | ||||||||||| |||| |||||    
T  30465218 cctattttaaaaaattttgacaaa 30465195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 14198597 - 14198537
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||| ||| ||| || | |||||||||||||||||||||||||||||    
T  14198597 tatttttaaaactttttataaaaaatagatatttttagtccttcaaaataatccttataaa 14198537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 4409619 - 4409537
Alignment:
Q  387 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataata 470  Q
    ||||||||||||| |||| ||||||| |||||||||| |||| |||||||||||| | | ||||| |||||| |||| ||||||    
T  4409619 atatgtttttagt-cctacaaaatcacaagtttttaagtttaatccctataaaatatcaatggtaattttagtcctccataata 4409537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 10311637 - 10311736
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||| ||| | ||||||||||  |||||| || |||||| |||||||||||||| ||||| |||||| | || | |||| |||| |||||||    
T  10311637 taaatatgttttaagtccttataaaatcacgagttttcaaatttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaa 10311736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 17141932 - 17141881
Alignment:
Q  407 aaatcataagtttttaattttagtccctataaaattttagtggtatttttag 458  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| ||||||    
T  17141932 aaatcataagtttttaagtttagtcgatataaaattttaatggtaattttag 17141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 626
Target Start/End: Original strand, 34187672 - 34187706
Alignment:
Q  592 gactaaacttaaaaatttgtaattttgtaaggact 626  Q
    ||||||||||||||||||||||||||||| |||||    
T  34187672 gactaaacttaaaaatttgtaattttgtagggact 34187706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 14897305 - 14897365
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| |||  | | |||| ||||| ||||||||||||||||||    
T  14897305 tattttgaaaactttttacaaaaaatatatatttttggtcctccaaaataatccttataaa 14897365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 384 - 562
Target Start/End: Complemental strand, 6449839 - 6449661
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||| |||||| |||||| |||||||  |||||| || |||| | || ||||||||||| || || ||||||   | ||||||||||||||||||||    
T  6449839 taaatatatttttaattcctacaaaatcacgagttttcaagtttaatgcccataaaattttaatgataattttagttttttataataatgtagtttgtaa 6449740  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaatataaata 562  Q
    ||||||| | ||||||||||||||||| ||||  |||||||||||||||| ||||||||| || ||||||||| |||||    
T  6449739 aaatagtccctattttaaaaactttttgcaaaagatggacacttttagtctttcaaaatagtctttataaatacaaata 6449661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 379 - 554
Target Start/End: Original strand, 40390884 - 40391058
Alignment:
Q  379 aagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtt 478  Q
    |||| |||||||||||||||| |||| |||||||| |||||| || |||||| |||||||||||||| || || |||||| |||| || ||| |||||||    
T  40390884 aaggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctccat-atattgtagtt 40390982  T
Q  479 tgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||||| ||||||   |||||| ||||| ||||||||| |||| | ||||||||| || ||||||| ||| ||||||    
T  40390983 tgtaagaatagtctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaaatagtccctataaa 40391058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 392 - 563
Target Start/End: Original strand, 15025785 - 15025955
Alignment:
Q  392 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 491  Q
    |||||||| |||| |||||||  |||| |||| |||||| | |||||||||||| ||||| |||||  |||||| |||| | |||||||| | ||||||     
T  15025785 tttttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttgtgataatagtc 15025884  T
Q  492 catattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttat-aaatataaatag 563  Q
    | |||||| ||||||||||||||| |||| | || ||||||||| ||||||| ||||||| ||||||||||||    
T  15025885 cctattttgaaaactttttacaaa-aatgtatac-tttagtcctccaaaatagtccttataaaatataaatag 15025955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 492
Target Start/End: Original strand, 10573942 - 10574059
Alignment:
Q  375 ataaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgt 474  Q
    ||||| || |||||||||||||||||| || ||||||| ||||||| || ||||||  |||||||| | || ||| | |||||  |||| |||||| |||    
T  10573942 ataaagggttaaatatgtttttagttcttacaaaatcacaagttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgt 10574041  T
Q  475 agtttgtaaaaatagttc 492  Q
    ||||||||||||||||||    
T  10574042 agtttgtaaaaatagttc 10574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 510
Target Start/End: Original strand, 6156049 - 6156152
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    ||||||||  ||||||||||| || | ||||||||||||| |||| ||||||| | || |||||| |||||||| ||||||||||||||||||| | |||    
T  6156049 aaaatcatgtgtttttaattt-agactctataaaattttaatggtttttttagtcttccataatattgtagtttataaaaatagttcatattttgataac 6156147  T
Q  506 ttttt 510  Q
    |||||    
T  6156148 ttttt 6156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 15882300 - 15882221
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctc 463  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| ||||    
T  15882300 taaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctc 15882221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 554
Target Start/End: Original strand, 38377811 - 38377964
Alignment:
Q  388 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 487  Q
    |||||||||||| | || ||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||             | || ||| ||| |||    
T  38377811 tatgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttag-------------tctaatttataagaat 38377897  T
Q  488 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||| | |||||||||||||||||| ||| |||| |||||||||||||| ||||||| ||| ||||||    
T  38377898 agtccctattttaaaaactttttataaaaaatgaacacttttagtcctccaaaatagtccctataaa 38377964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 31050144 - 31049984
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | |||  ||||||| | |||||||| ||||| |||||||||||| || | |||  |||||  ||| |||||| ||||| ||||||    
T  31050144 taaatatgtttttaatccctgcaaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagttctcgataatattgtagcttgtaa 31050045  T
Q  484 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 543  Q
    | |||||   |||||| ||||| |||||| ||| |||||||| ||||||| || |||||||    
T  31050044 agatagtcattattttgaaaaccttttacaaaaaaatggacatttttagttctccaaaata 31049984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 40391145 - 40391085
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 444  Q
    |||||||||||||||| |||||||||| | |||||||||| ||||||||||| ||| ||||    
T  40391145 taaatatgtttttagtccctataaaattacaagtttttaagtttagtccctacaaattttt 40391085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 784250 - 784192
Alignment:
Q  380 agggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataa 438  Q
    ||||| |||||||||||||| | ||||||||||  ||||||||| ||||||||||||||    
T  784250 agggttaatatgtttttagtccttataaaatcacgagtttttaagtttagtccctataa 784192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 626
Target Start/End: Complemental strand, 38377857 - 38377820
Alignment:
Q  589 agggactaaacttaaaaatttgtaattttgtaaggact 626  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  38377857 agggactaaacttaaaaatttgtgattttgtaaggact 38377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 784000 - 784056
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 440  Q
    ||||||| |||||| ||| |||||||| |||||||||||| |||||||| |||||||    
T  784000 taaatatatttttatttcttataaaattataagtttttaaatttagtccttataaaa 784056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 554
Target Start/End: Complemental strand, 784168 - 784088
Alignment:
Q  474 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| |||||||| | | |||||| ||||||||||||||| |||||| | |||||||| | ||||||| ||| ||||||    
T  784168 tagtttctaaaaataatccctattttgaaaactttttacaaaaaatggatatttttagtcatccaaaatagtccgtataaa 784088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 14806451 - 14806511
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  14806451 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 14806511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 507
Target Start/End: Complemental strand, 22593453 - 22593330
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||||| || | ||  |||||| ||||||| || ||||||  |||| |||||||| ||||  |||||| | |||| ||||   ||||||||||    
T  22593453 taaatatgttttttgtccttacgaaatcacaagttttcaagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaa 22593354  T
Q  484 aaatagttcatattttaaaaactt 507  Q
    ||||||| | | ||||||||||||    
T  22593353 aaatagtcccttttttaaaaactt 22593330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 516
Target Start/End: Complemental strand, 26081297 - 26081196
Alignment:
Q  415 agtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaa 514  Q
    |||||| |||||||||  | ||||||||||| || || |||||  |||| | |||| |  ||||| ||| |||||||| |||||||||||||||| ||||    
T  26081297 agttttcaattttagtttcgataaaattttattgataattttactcctccacaatattaaagtttataagaatagttcctattttaaaaacttttgacaa 26081198  T
Q  515 at 516  Q
    ||    
T  26081197 at 26081196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 43914042 - 43914099
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaat 441  Q
    ||||||| |||||||| ||||||||||||  ||||||||| |||||| | ||||||||    
T  43914042 taaatatatttttagtccctataaaatcacgagtttttaagtttagttcatataaaat 43914099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 625
Target Start/End: Complemental strand, 47472231 - 47472199
Alignment:
Q  593 actaaacttaaaaatttgtaattttgtaaggac 625  Q
    |||||||||||||||||||||||||||| ||||    
T  47472231 actaaacttaaaaatttgtaattttgtagggac 47472199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 34359330 - 34359500
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| | || |||||||| ||||||||| |||||||| |||||||||||| ||||| |||||  |||| | |||| | ||||||||||    
T  34359330 taaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttgtaa 34359429  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||| || | | |||| ||||||||||||||| |||||| | |||||||||||||||| | ||| ||||||    
T  34359430 aaatggtccctgttttgaaaactttttacaaaaaatggataattttagtccttcaaaaaagtccctataaa 34359500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 374 - 554
Target Start/End: Original strand, 39340760 - 39340938
Alignment:
Q  374 aataaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatg 473  Q
    |||||| || |||||||||||| ||| |||| |||||||  ||||||||| ||||||||||||||| ||||| ||||| |||||| | || | |||| ||    
T  39340760 aataaagggttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattg 39340859  T
Q  474 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||||||||||||||||| | ||||||  ||  |||||||||| ||||   |||||||||||| ||||||| || |||||||    
T  39340860 tagtttgtaaaaatagtccctatttt--aatttttttacaaaaaatgtgtacttttagtcctccaaaatagtcattataaa 39340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 50334804 - 50334632
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||| ||||||||  |||||||||||| ||||||| | |||| |||||||||||||||| || || |||||| | || | |||| ||||||||||||    
T  50334804 taaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgtaa 50334705  T
Q  484 aaatagttcatattttaaaaac--tttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    || |||||| |||||| || ||  |||||||||| |||||| | ||||||||||  |||||| ||| ||||||    
T  50334704 aattagttcctattttgaatactttttttacaaaaaatggatatttttagtcctctaaaatagtccctataaa 50334632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 44447021 - 44446851
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||||| ||| || ||||||||| |||| |||| ||||||||||| | ||| |||||| |||  | |||| | ||||||||||    
T  44447021 taaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaa 44446922  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||||||   | |||| ||||||||||||||| ||||   |||||||||||| ||||||| ||| ||||||    
T  44446921 gaatagtctctgttttgaaaactttttacaaaaaatgtgtacttttagtcctccaaaatagtccctataaa 44446851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 553
Target Start/End: Original strand, 45743779 - 45743898
Alignment:
Q  434 tataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtc 533  Q
    |||||||||||| | |||  ||||| ||| |||| || |||||||||||| ||| || | |||||||||||||||||||||| ||||||||||||| |||    
T  45743779 tataaaattttaatagtaactttagtcctttatagtagtgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaatggacactttttgtc 45743878  T
Q  534 cttcaaaataatccttataa 553  Q
    || ||||||| || ||||||    
T  45743879 ctccaaaatagtctttataa 45743898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 28769673 - 28769505
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| ||||||||||    |||||| || || ||||  |||||||||||| ||||  |||| | |||| |||||| ||||||||||||    
T  28769673 taaatatgtttttagtccctataaaattccgagttttcaaatt-agtct-tataaaattttaatggtgatttttgtcctccataatattgtagtttgtaa 28769576  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||||||   |||||||||||||||||||| | ||| || ||||||| |||| ||||||| ||||||||||    
T  28769575 gaatagtctttattttaaaaactttttacagaaaattgatacttttaatcctccaaaatagtccttataaa 28769505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 504
Target Start/End: Original strand, 20336780 - 20336900
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||  |||||| || |||||||| |||||||||||| ||||| |||||| |||| |||||| || | |||||||    
T  20336780 taaatatgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcctccataatattgaattttgtaa 20336879  T
Q  484 aaatagttcatattttaaaaa 504  Q
      ||||| | |||||| ||||    
T  20336880 ttatagtccctattttgaaaa 20336900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 485
Target Start/End: Original strand, 13899456 - 13899564
Alignment:
Q  376 taaaagggt-aaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgt 474  Q
    ||||||||| |||||||||||||||||||| | |||||  ||| || || |||||| |||||||||||||| ||||| |||||| |||| |||||| |||    
T  13899456 taaaagggtcaaatatgtttttagttcctacataatca--agtcttgaagtttagttcctataaaattttaatggtaattttagtcctccataatattgt 13899553  T
Q  475 agtttgtaaaa 485  Q
    ||||| |||||    
T  13899554 agtttataaaa 13899564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 515
Target Start/End: Original strand, 20314887 - 20315018
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||| ||||||| |||| |||||||  |||||| || |||||||| |||||||||||| ||| | |||||| |||| |||||| || | |||||||    
T  20314887 taaatatgcttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcctccataatattgaattttgtaa 20314986  T
Q  484 aaatagttcatattttaaaaactttttacaaa 515  Q
     ||||||   |||||| |||| ||||||||||    
T  20314987 taatagtctctattttgaaaattttttacaaa 20315018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 436 - 563
Target Start/End: Complemental strand, 22853489 - 22853361
Alignment:
Q  436 taaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 535  Q
    |||||||||| ||||| |||||| |||| |||||| | || |||||||||||||| | ||||||||||| ||| ||| || ||| || ||||||| ||||    
T  22853489 taaaattttaatggtaattttagtcctccataatattttaatttgtaaaaatagtccttattttaaaaaatttatactaaaaatagatacttttaatcct 22853390  T
Q  536 tcaaaataatccttat-aaatataaatag 563  Q
    | |||||| | | ||| ||||||||||||    
T  22853389 ttaaaatagttcctataaaatataaatag 22853361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 511
Target Start/End: Original strand, 17268848 - 17268957
Alignment:
Q  402 ctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaa 501  Q
    ||||||||| |  ||| ||||| | |||||| |||| ||||||| || || |||||| | |||||| || |||||||||||||||||||  ||||||||     
T  17268848 ctataaaattacgagtgtttaagtatagtccatatacaattttaatgataattttagtcttctatattattgtagtttgtaaaaatagtctatattttat 17268947  T
Q  502 aaacttttta 511  Q
    |||| |||||    
T  17268948 aaacatttta 17268957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 483
Target Start/End: Complemental strand, 9766151 - 9766052
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||||||||  ||||||||| | ||  |||||| |||| |  ||| ||||||||| || || |||||| |||||| |||| ||||||||||||    
T  9766151 taaatatgtttttagtatctataaaattagaaacttttaagtttattttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 9766052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 504
Target Start/End: Original strand, 16876437 - 16876503
Alignment:
Q  438 aaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaa 504  Q
    |||||||| | ||| |||||| |||| |||||| |||||||||||| |||||| | |||||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaatagtccctattttaaaaa 16876503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 16607236 - 16607176
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| |||  | | |||| ||||| ||||||||||||||||||    
T  16607236 tattttgaaaactttttacaaaaaatatatatttttggtcctccaaaataatccttataaa 16607176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 43545400 - 43545340
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 444  Q
    |||||||||||||||||||||||||   || |  |||| |||||||||||| |||||||||    
T  43545400 taaatatgtttttagttcctataaatatatcaactttttattttagtccctctaaaatttt 43545340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 52423251 - 52423195
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 440  Q
    |||||||||||||||| |||| ||||| ||||||||| |  |||| |||||||||||    
T  52423251 taaatatgtttttagtccctacaaaattataagttttcatgtttaatccctataaaa 52423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 387 - 554
Target Start/End: Original strand, 20985930 - 20986099
Alignment:
Q  387 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaa 486  Q
    ||||||||||| |||||| |||||||  ||||||||| ||||||||||||||||||||| ||||| |||||| | |||| |||| ||||||||| || ||    
T  20985930 atatgtttttaattcctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttgcaagaa 20986029  T
Q  487 tagttcatattttaaaaactttttac--aaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||| | |||||| ||||||||||||  ||| ||| || |||||||||||| ||||||| ||| ||||||    
T  20986030 tagtccctattttgaaaactttttacaaaaaaaatagatacttttagtcctccaaaatagtccctataaa 20986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 33753128 - 33752959
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| ||||||| ||||||| || |||||||| |||||||||||| ||||  ||||||||||| |||||| ||||||||||||    
T  33753128 taaatatgtttttagt-cctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtagtttgtaa 33753030  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||| ||   |||||| |||  || ||||||| |||| ||||||||| | || ||||||| ||| ||||||    
T  33753029 gaatggtcactattttgaaactttattacaaaaaatgaacacttttacttctccaaaatagtccctataaa 33752959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 384 - 532
Target Start/End: Complemental strand, 50919448 - 50919301
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| | || |||||||||| |||| || ||||||||||||||||||||| ||||| |||||| | || || |||||||| |||||||    
T  50919448 taaatatgtttttagtccttacaaaatcataaatttt-aagtttagtccctataaaattttaatggtaattttagtcttc-atgataatgtaatttgtaa 50919351  T
Q  484 aaatagttcatattttaaaaacttttta-caaataatggacacttttagt 532  Q
    ||||| |  |||||||||||||||||||  ||| ||||||||| ||||||    
T  50919350 aaataatcgatattttaaaaactttttagaaaaaaatggacacatttagt 50919301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 550
Target Start/End: Complemental strand, 16545578 - 16545413
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | |||| |||||  | ||||||||| |||| |||||||||||||||| || ||  ||||  |||| | |||| |||||||| |||    
T  16545578 taaatatgtttttaatccctacaaaattttgagtttttaagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt-taa 16545480  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatcctta 550  Q
    |||| || | |||||| |||||||| |||||| |||||| | |||||||||| ||||||| ||||||    
T  16545479 aaatggtccctattttgaaaactttatacaaaaaatggatatttttagtcctccaaaatagtcctta 16545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 510
Target Start/End: Original strand, 13392831 - 13392935
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    |||||||| |||||| || ||||||||||||||| ||||| || || |||||| | || | |||| ||||||||||||||||||| | ||||||||||||    
T  13392831 aaaatcattagttttaaagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaaaaatagtccctattttaaaaac 13392930  T
Q  506 ttttt 510  Q
    |||||    
T  13392931 ttttt 13392935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 510
Target Start/End: Complemental strand, 25506709 - 25506585
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||| ||||||||||| |||||||  | |||| || |||||| ||||| || ||||| || ||||| ||| ||| ||||||| |||||||||||     
T  25506709 taaatatgtgtttagttcctacaaaatcacga-ttttaaagtttagttcctattaa-ttttaatgttatttgtagtcctttataatattgtagtttgtat 25506612  T
Q  484 aaatagttcatattttaaaaacttttt 510  Q
     |||||| |||||||||||||||||||    
T  25506611 gaatagtccatattttaaaaacttttt 25506585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 29307753 - 29307657
Alignment:
Q  387 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||| |||| |||| |||||||| ||||||||| |||||||||||||| |||||| | ||| |||||| |||  | |||| ||||||||||||    
T  29307753 atatgtttctagtccctacaaaatcatgagtttttaagtttagtccctataagattttaattgtaattttagtccttcaaaatactgtagtttgtaa 29307657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 543
Target Start/End: Complemental strand, 37470983 - 37470916
Alignment:
Q  476 gtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||||||  ||||||||||| |||||||    
T  37470983 gtttgtaagaatagttcctatttgaaaaactttttacaaaaaatggatgcttttagtcctccaaaata 37470916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 16545318 - 16545369
Alignment:
Q  380 agggtaaatatgtttttagttcctataaaatcataagtttttaattttagtc 431  Q
    |||||||||||||||||||| |||||||||| | |||||||||| |||||||    
T  16545318 agggtaaatatgtttttagtccctataaaattacaagtttttaagtttagtc 16545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 480
Target Start/End: Original strand, 3891451 - 3891541
Alignment:
Q  390 tgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttg 480  Q
    ||||||||| ||||| ||||||| || | | ||| ||||||||||||||||||||| ||||| |||||| ||||  ||||| |||| ||||    
T  3891451 tgtttttagatcctacaaaatcacaaatgtataagtttagtccctataaaattttattggtagttttagtcctccgtaatattgtaatttg 3891541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 1236755 - 1236708
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtc 431  Q
    |||||||||||||| | |||| ||||| ||||||||||||||||||||    
T  1236755 taaatatgtttttaatccctaaaaaattataagtttttaattttagtc 1236708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 37471094 - 37471004
Alignment:
Q  391 gtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgt 481  Q
    ||||||||| ||||  ||||||  |||||| || |||||||||||||||| |||| ||||  |||||| |||| |||||| | ||||||||    
T  37471094 gtttttagtccctaccaaatcaagagttttcaagtttagtccctataaaaatttaatggtgcttttagtcctccataatattatagtttgt 37471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 23278822 - 23278793
Alignment:
Q  384 taaatatgtttttagttcctataaaatcat 413  Q
    ||||||||||||||||||||||||||||||    
T  23278822 taaatatgtttttagttcctataaaatcat 23278793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 504
Target Start/End: Original strand, 29102855 - 29102956
Alignment:
Q  403 tataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaa 502  Q
    ||||| ||||| |||||| || ||||||||||||| ||||| | || || |||||| |||| | |||| ||||| ||  ||||||||| | |||||||||    
T  29102855 tataatatcatgagttttcaagtttagtccctatacaatttaaatgataattttagtcctccaaaatattgtagctttcaaaaatagtccctattttaaa 29102954  T
Q  503 aa 504  Q
    ||    
T  29102955 aa 29102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 35218058 - 35218118
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 444  Q
    |||||||||||||||| |||| ||||||| || ||||||| ||||||| ||  ||||||||    
T  35218058 taaatatgtttttagtccctacaaaatcacaattttttaaatttagtctctggaaaatttt 35218118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 34904010 - 34904180
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||||| || |  || ||||||  ||  |||||| ||||||||||||    
T  34904010 taaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagtttgtaa 34904109  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     |||| | | |||||| ||||||||||||||| |||||| ||||||||||||  |||||| ||||| ||||    
T  34904110 gaataatccctattttgaaaactttttacaaagaatggatacttttagtcctataaaatagtccttttaaa 34904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 389 - 520
Target Start/End: Original strand, 6191094 - 6191225
Alignment:
Q  389 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 488  Q
    |||||||||||  |||||||||||| ||| || || ||||||||||||||||||||| ||||| |||||| |||| |||||| |||| ||||||| ||||    
T  6191094 atgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaata 6191193  T
Q  489 gttcatattttaaaaactttttacaaataatg 520  Q
    || | |||||| ||||||||||||||| ||||    
T  6191194 gtccgtattttgaaaactttttacaaaaaatg 6191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 535
Target Start/End: Original strand, 855586 - 855715
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||| |||||| ||||  | ||| |||||||||||  |||||| |||||||| |||||    
T  855586 aaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaatagtccatattttgaaaac 855685  T
Q  506 tttttacaaataatggacacttttagtcct 535  Q
    |||||||||| |||| | | ||||||||||    
T  855686 tttttacaaaaaatgaatatttttagtcct 855715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 35954224 - 35954383
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||||||| ||| ||||||| || |||||||||||| |||||||| ||||| |||||| |||| |||||| ||||||||||||    
T  35954224 taaatatgtttttagtccctataaa-tcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttgtaa 35954322  T
Q  484 aaatagttcatattttaaaaacttttt-acaaataatggacacttttagtccttcaaaata 543  Q
     ||||||   |||| ||||| |||||| | ||| | || | |||||||||||| |||||||    
T  35954323 gaatagtctctattataaaatctttttaataaaaattgaaaacttttagtcctccaaaata 35954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 554
Target Start/End: Complemental strand, 31994888 - 31994722
Alignment:
Q  388 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 487  Q
    |||||||||||| |||| ||||||| || ||||||| |||| ||||| |||||||||| | ||| ||||||  ||| |||||| |||| ||||||| |||    
T  31994888 tatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatttgtaagaat 31994789  T
Q  488 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||| |  ||||| ||||||||||  ||| ||||||||||| || |||| ||||||| ||| ||||||    
T  31994788 agtcccaattttgaaaactttttttaaaaaatggacacttgtaatcctccaaaatagtccctataaa 31994722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 543
Target Start/End: Original strand, 8794580 - 8794731
Alignment:
Q  388 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 487  Q
    |||||||| ||| |||| ||||||| || |||| || |||||||| |||||||||||| ||||| |||||| ||   |||||| |||| || |||| |||    
T  8794580 tatgttttcagtccctacaaaatcacaaattttcaagtttagtcc-tataaaattttaatggtaattttagtcc---ataatattgtaattcgtaagaat 8794675  T
Q  488 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    ||| | |||||||||||||||||||||| |||||||| |||||||| | |||||||    
T  8794676 agtccctattttaaaaactttttacaaaaaatggacatttttagtcatccaaaata 8794731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 30641194 - 30641034
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| || ||||| |||||||||  ||||||| ||| |||||||| |||||| ||||| ||||   |||| | ||||||||||    
T  30641194 taaatatgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcctccgaaatattttagtttgtaa 30641095  T
Q  484 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 543  Q
    || |||| | |||||| |||||||| ||| ||| |||||| |||||| ||||| |||||||    
T  30641094 aagtagtccctattttgaaaactttatacaaaaaaatggatacttttggtcctccaaaata 30641034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 27694683 - 27694513
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| ||| |  |||||||| ||||||||| |||| | ||| | ||||||||  |||| |||||  |||| | |||| ||| ||| ||||    
T  27694683 taaatatgtttttaattcttgcaaaatcatgagtttttaagtttaattcctgtcaaattttaaaggtaattttaatcctccaaaatattgtggttcgtaa 27694584  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    || | || | |||||||||||||||||||||| ||| || | |||||||||||| ||||||||| ||||||    
T  27694583 aagtggtccctattttaaaaactttttacaaaaaatagataattttagtccttctaaataatccctataaa 27694513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 39293279 - 39293110
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | | || |||||||  | ||| ||  |||| |||||||||||||||| ||||| |||||| |||||| |||| |||| |||||||    
T  39293279 taaatatgtttttaatccatacaaaatcacgaatttctaggtttaatccctataaaattttaatggtaattttagtcctctaaaatattgtaatttgtaa 39293180  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     |||||||| |||||||||||| ||||  ||| |||||| | ||||| |||| ||||||| ||| ||||||    
T  39293179 taatagttcctattttaaaaacatttt-taaaaaatggatatttttattcctccaaaatagtccatataaa 39293110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 543
Target Start/End: Original strand, 10077626 - 10077764
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    |||||||| |||||| || ||||||||||||||| ||||| ||||| |||||  |||  |||||| |||||||||||| |||||| | |||||| |||||    
T  10077626 aaaatcatgagttttcaagtttagtccctataaa-ttttaatggtaattttaatccttcataatattgtagtttgtaataatagtccctattttgaaaac 10077724  T
Q  506 tttttac--aaataatggacacttttagtccttcaaaata 543  Q
    |||||||  ||| |||||| | |||||||||| |||||||    
T  10077725 tttttacaaaaaaaatggatatttttagtcctccaaaata 10077764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 488
Target Start/End: Complemental strand, 24490721 - 24490617
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| ||||| ||  |||||||| ||||||| ||||||||||||| | ||| |||||| |||||| |||| ||||||||||||    
T  24490721 taaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttgtaa 24490622  T
Q  484 aaata 488  Q
     ||||    
T  24490621 gaata 24490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 534
Target Start/End: Complemental strand, 29242730 - 29242582
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||| ||||||||| |||| ||||| |  |||||| || ||||||||||||||||||||| ||||| |||||| |||| |  ||| | ||||||||||    
T  29242730 taaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgtaa 29242631  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcc 534  Q
     |||||| | ||||||   | ||||||||||| ||| || |||||||||||    
T  29242630 gaatagtccctatttt--gacctttttacaaaaaatcgatacttttagtcc 29242582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 30632676 - 30632591
Alignment:
Q  414 aagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 499  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| | |  |||||| ||||||||||| ||||||| | ||||||    
T  30632676 aagtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgtacaaatagtccctatttt 30632591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 30669145 - 30669060
Alignment:
Q  414 aagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 499  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| | |  |||||| | ||||||||| ||||||| | ||||||    
T  30669145 aagtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagtttgtacaaatagtccctatttt 30669060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 486
Target Start/End: Original strand, 36773985 - 36774085
Alignment:
Q  385 aaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaa 484  Q
    |||||||||||||||||||| ||| ||| |||||||| || ||||| ||||||| |||||| ||||| |||||  ||||| | ||| |||| ||||||||    
T  36773985 aaatatgtttttagttcctacaaactcacaagttttt-atgttagttcctataagattttaatggtaattttaatcctctgtgatattgtaatttgtaaa 36774083  T
Q  485 aa 486  Q
    ||    
T  36774084 aa 36774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 37284351 - 37284290
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 445  Q
    ||||||| |||||||| | || ||||| || ||||||||| |||||||||||||||||||||    
T  37284351 taaatatatttttagtccttacaaaattatgagtttttaagtttagtccctataaaatttta 37284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 434690 - 434530
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctat-aataatgtagtttgta 482  Q
    ||||||||||||||| || ||| ||| || |  ||||||| |||||||  |||||||||||| ||||  |||||| ||| | | |||| |  ||||||||    
T  434690 taaatatgtttttagatcttatcaaagcacacatttttaagtttagtcaatataaaattttaatggtgattttagtcctttgtaaatatttaagtttgta 434591  T
Q  483 aaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    | |||||| ||| |||| ||||||||||  ||| |||||| | |||| ||||| |||||||    
T  434590 agaatagtccatcttttcaaaactttttctaaaaaatggatatttttcgtcctccaaaata 434530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 21595025 - 21595085
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  21595025 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 21595085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 11711316 - 11711255
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 445  Q
    ||||||| |||||||||  ||||||||||  || ||| || |||||||||||||||||||||    
T  11711316 taaatatatttttagtttttataaaatcacgagctttcaagtttagtccctataaaatttta 11711255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 17448957 - 17448896
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 445  Q
    |||||||||||||| | |||||||||| || ||||||||| ||||||   ||||||||||||    
T  17448957 taaatatgtttttaatccctataaaattatgagtttttaagtttagtttttataaaatttta 17448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 33912690 - 33912766
Alignment:
Q  485 aatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaatataaata 562  Q
    |||||||| |||||||| ||||||||| ||||| || | ||| ||| |||||||||||| || || ||||||||||||    
T  33912690 aatagttcttattttaacaactttttaaaaata-tgaatactattattccttcaaaatagtctttgtaaatataaata 33912766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 43910163 - 43910224
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 445  Q
    ||||||| |||  ||| |||| |||||||||||||||||| |||| | ||||||||||||||    
T  43910163 taaatatatttggagtccctacaaaatcataagtttttaagtttaattcctataaaatttta 43910224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 14201376 - 14201328
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtcc 432  Q
    |||||||||||||||| ||||||||||||  | ||| ||||||||||||    
T  14201376 taaatatgtttttagtccctataaaatcaggactttctaattttagtcc 14201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 25067651 - 25067810
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| |  ||| |||||||||| ||||||| ||| ||  ||||||||||||| ||||| |||||  |||| |||||| | ||||||||||    
T  25067651 taaatatgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttgtaa 25067750  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
    ||||||| | |||||| |||||| |||||||| |||||| |||||||||| | |||||||    
T  25067751 aaatagtccttattttgaaaactgtttacaaaaaatggatacttttagtcttccaaaata 25067810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 384 - 554
Target Start/End: Complemental strand, 27567835 - 27567663
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||| |||||||| |||| |||||||| |||||| || |||| |||||||||||||||| ||||| |||||| |||  |||||| ||||||||||||    
T  27567835 taaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtagtttgtaa 27567736  T
Q  484 aaatagttcatattttaaaaacttttt--acaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     |||||| | |||||| ||||||||||  | ||| || | | | |||||||||| ||||||| ||||||||||    
T  27567735 gaatagtccttattttgaaaactttttgcaaaaaaaaagtatatttttagtcctccaaaatagtccttataaa 27567663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 11297757 - 11297917
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||| | |||| ||||| || |||||||||  ||||| ||||| |||||||| ||||| |||||| |||| | |||| | ||||||||||    
T  11297757 taaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtaa 11297856  T
Q  484 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 543  Q
    ||||||| | |||||| |||||||| ||| ||| |||||| |||||||||||| |||||||    
T  11297857 aaatagtccctattttgaaaactttatactaaaaaatggatacttttagtcctccaaaata 11297917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 389 - 489
Target Start/End: Original strand, 34471227 - 34471327
Alignment:
Q  389 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 488  Q
    ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||||||||| ||||| |||||| |||| | |||| |||||||||||| ||||    
T  34471227 atgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaataata 34471326  T
Q  489 g 489  Q
    |    
T  34471327 g 34471327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 20132053 - 20132223
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||||| ||| || ||||||||| ||||||  | ||||||||||| | ||| |||||| |||  | |||| | || |||||||    
T  20132053 taaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgtaa 20132152  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     ||||||   | |||| ||||||||||||||| |||||| || ||||||||| ||||||| ||| ||||||    
T  20132153 gaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaa 20132223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 406 - 554
Target Start/End: Original strand, 28098553 - 28098700
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 505  Q
    |||||||| ||||||||| ||| |||  |||||||||||| ||||| |||||| |||| ||||||  |||||||||| ||||| | |||||||| |||||    
T  28098553 aaaatcatgagtttttaagtttggtctttataaaattttaatggtaattttagtcctcgataata--gtagtttgtagaaataatccatattttgaaaac 28098650  T
Q  506 -tttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
     |||||||||| |||| | | |||||||||| ||||||| ||| ||||||    
T  28098651 ttttttacaaaaaatgaatatttttagtcctccaaaatagtccctataaa 28098700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 540
Target Start/End: Complemental strand, 13009480 - 13009377
Alignment:
Q  438 aaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataa-tggacacttttagtcctt 536  Q
    |||||||| ||||| |||||| ||||||||||| |||||||||||| ||||||   |||||||| ||||||||||||| || || | ||||||||||||     
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaagtgaatacttttagtcctc 13009381  T
Q  537 caaa 540  Q
    ||||    
T  13009380 caaa 13009377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 515
Target Start/End: Complemental strand, 30851797 - 30851674
Alignment:
Q  392 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 491  Q
    ||||||||||||||||||| |  |||||| || |||||  |||||||||||||| ||||| ||||||   || |||||| || ||||||||| ||||||     
T  30851797 tttttagttcctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtc 30851698  T
Q  492 catattttaaaaactttttacaaa 515  Q
    | ||||||||||| |||| |||||    
T  30851697 cctattttaaaaaattttgacaaa 30851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 418 - 554
Target Start/End: Original strand, 12925246 - 12925382
Alignment:
Q  418 ttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaata 517  Q
    |||||| |||||| |||||||||||||| || || ||||||  ||| | || | | || ||| ||| |||| | | |||||| ||||||||||||||| |    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttaaaactttttacaaaaa 12925345  T
Q  518 atggacacttttagtccttcaaaataatccttataaa 554  Q
    || || | |||||||||| ||||||||||||||||||    
T  12925346 atagatatttttagtcctccaaaataatccttataaa 12925382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 21367169 - 21367255
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataata 470  Q
    |||||||||||||||  |||||||||| || ||||||||| |||||||  |||||||||||| ||||| |||||  |||| ||||||    
T  21367169 taaatatgtttttagcccctataaaattatgagtttttaaatttagtctttataaaattttaatggtaattttaatcctccataata 21367255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 28565170 - 28565079
Alignment:
Q  424 ttttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaa 515  Q
    ||||||| | |||||||||||| |  || |||||| ||| |||||||||||||||| ||||||||||   |||||| |||||| ||||||||    
T  28565170 ttttagttcttataaaattttaataataattttagtcctttataataatgtagtttataaaaatagtctctattttgaaaactctttacaaa 28565079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 28555280 - 28555354
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttag 458  Q
    ||||||||||||||||  ||| |||||| | | ||||||| |||||||| |||||||||||| ||||| ||||||    
T  28555280 taaatatgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaattttag 28555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 28545287 - 28545217
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtattt 454  Q
    |||||||||||||||| |||| |||||||||| |||| || | ||||  ||||||||| ||| ||||||||    
T  28545287 taaatatgtttttagtccctacaaaatcataaattttaaagtgtagtttctataaaatattaatggtattt 28545217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 620
Target Start/End: Complemental strand, 38487366 - 38487338
Alignment:
Q  592 gactaaacttaaaaatttgtaattttgta 620  Q
    |||||||||||||||||||||||||||||    
T  38487366 gactaaacttaaaaatttgtaattttgta 38487338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 384 - 515
Target Start/End: Complemental strand, 5634 - 5503
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| |||||||||  || |||||||| |||||||| |||||| ||||| |||| | |||| | ||||||||||    
T  5634 taaatatgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcctccaaaatattttagtttgtaa 5535  T
Q  484 aaatagttcatattttaaaaactttttacaaa 515  Q
    || |||| | |||||| |||||||| ||||||    
T  5534 aagtagtccctattttgaaaactttatacaaa 5503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 543
Target Start/End: Complemental strand, 152339 - 152180
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    ||||||||||| |||| |||||||||| || | |||| || |||||||  |||||||||||| ||||| |||||| |||  |||||| ||||| ||||||    
T  152339 taaatatgtttgtagtccctataaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgtaa 152240  T
Q  484 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 543  Q
     |||||| | |||||| ||||||| || |||| |||| | | |||||||| |||||||||    
T  152239 gaatagtccctatttttaaaacttcttgcaaaaaatgaatatttttagtctttcaaaata 152180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 554
Target Start/End: Complemental strand, 17099 - 16922
Alignment:
Q  377 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtag 476  Q
    |||||| |||||||||||||||| ||||||||||||  |||||| |  |||| |||||||||||||||| ||||| |||||| |||  | ||||  | |     
T  17099 aaaaggttaaatatgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcctacaaaatatagcaa 17000  T
Q  477 tttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||||||| |||||| | |||||| ||||| |||||| || |||| | || |||||||||  |||||| ||| ||||||    
T  16999 tttgtaagaatagtccctattttgaaaacgttttactaaaaatgtatacctttagtcctctaaaatagtccctataaa 16922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 554
Target Start/End: Complemental strand, 253909 - 253745
Alignment:
Q  389 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 488  Q
    ||||||||| |||||||||||| || ||||||||| |||||| | |||||||||||| | ||| |||||| ||| || |||| | ||||||||||  |||    
T  253909 atgtttttaattcctataaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaaggata 253810  T
Q  489 gttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    ||   |||||| |||  |||||||||| |||||| ||||||| |||| ||||||| ||| ||||||    
T  253809 gtctctatttt-aaacttttttacaaaaaatggatacttttaatcctccaaaatagtccctataaa 253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 33276 - 33216
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  33276 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 33216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 499
Target Start/End: Original strand, 8599 - 8714
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 483  Q
    |||||||||||||||| |||| |||||||| |||||||||  |||||||| || |||||||| ||||| |||||| |||| | |||| |  ||||||| |    
T  8599 taaatatgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcctccaaaatatttaagtttgtta 8698  T
Q  484 aaatagttcatatttt 499  Q
    ||||||| | ||||||    
T  8699 aaatagtccctatttt 8714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 3221 - 3300
Alignment:
Q  384 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctc 463  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||| ||||||| |||||||| ||||| |||||| ||||    
T  3221 taaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcctc 3300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 2 - 95
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 499  Q
    |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| |  ||||||| |||||||| | ||||||    
T  2 aaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaatagtccctatttt 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 19873 - 19788
Alignment:
Q  406 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 491  Q
    |||||||| | ||||||  |||||||||||||||||||||  |||| |||||| | || | |||| ||||||| ||||||||||||    
T  19873 aaaatcatgaatttttatgtttagtccctataaaattttaacggtaattttagtcgtcgaaaatattgtagttagtaaaaatagtt 19788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 363207 - 363071
Alignment:
Q  418 ttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaata 517  Q
    |||||| |||||| |||||||||||||| || || ||||||  ||| | || | | || ||| ||| |||| | | |||||| | ||||||||||||| |    
T  363207 ttttaagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaactttttacaaaaa 363108  T
Q  518 atggacacttttagtccttcaaaataatccttataaa 554  Q
    || || | |||||||||| |||| |||||||||||||    
T  363107 atagatatttttagtcctccaaagtaatccttataaa 363071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 360604 - 360544
Alignment:
Q  494 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 554  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| |||||||||| |||||||    
T  360604 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatctttataaa 360544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University