View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_6 (Length: 496)
Name: NF13389_low_6
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55616335 - 55616044
Alignment:
| Q |
1 |
attgagagatatataaatatagatagagtataactttattcattcaagcaccatgttagaaatgggaaggattattccggtgaggtttgagagggtagcg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55616335 |
attgagagatatataaatatagatatagtataactttattcattcaagcaccatgttagaaatgggaaggattattccggtgaggtttgagagggtagcg |
55616236 |
T |
|
| Q |
101 |
gcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaacactcacctgaaagttcaaccgatttatcagatcttgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55616235 |
gcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaacactcacctgaaagttcaaccgatttatcagatcttgtga |
55616136 |
T |
|
| Q |
201 |
aatcgttcttggagaagaattctgtgagagcagaagaagatgcggttgcttttgataaggaggatcgtgattttgagtggtatgattacgag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55616135 |
aatcgttcttggagaagaattctgtgagagcagaagaagatgcggttgcttttgataaggaggatcgtgattttgagtggtatgattacgag |
55616044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55623639 - 55623348
Alignment:
| Q |
1 |
attgagagatatataaatatagatagagtataactttattcattcaagcaccatgttagaaatgggaaggattattccggtgaggtttgagagggtagcg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55623639 |
attgagagatatataaatatagatatagtataactttattcattcaagcaccatgttagaaatgggaaggattattccggtgaggtttgagagggtagcg |
55623540 |
T |
|
| Q |
101 |
gcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaacactcacctgaaagttcaaccgatttatcagatcttgtga |
200 |
Q |
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| T |
55623539 |
gcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaacactcacctgaaagttcaaccgatttatcagatcttgtga |
55623440 |
T |
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| Q |
201 |
aatcgttcttggagaagaattctgtgagagcagaagaagatgcggttgcttttgataaggaggatcgtgattttgagtggtatgattacgag |
292 |
Q |
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| T |
55623439 |
aatcgttcttggagaagaattctgtgagagcagaagaagatgcggttgcttttgataaggaggatcgtgattttgagtggtatgattacgag |
55623348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 356 - 483
Target Start/End: Complemental strand, 55615980 - 55615853
Alignment:
| Q |
356 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55615980 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
55615881 |
T |
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| Q |
456 |
attatttacttactgtttacctttgctt |
483 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
55615880 |
attatttacttactgtttacctttgctt |
55615853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 356 - 483
Target Start/End: Complemental strand, 55623284 - 55623157
Alignment:
| Q |
356 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55623284 |
gctgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggta |
55623185 |
T |
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| Q |
456 |
attatttacttactgtttacctttgctt |
483 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
55623184 |
attatttacttactgtttacctttgctt |
55623157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 55631009 - 55630841
Alignment:
| Q |
62 |
atgggaaggattattccggtgaggtttgagagggtagcggcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaac |
161 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
55631009 |
atgggaagtgttattccggtgaggattgagaaggtaacggcggcgtttaagagtgatgaggcggcgcgtgggaggctatgtgaaagcagtggaagcgaac |
55630910 |
T |
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| Q |
162 |
actcacctgaaagttcaac---cgatttatcagatcttgtgaaatcgttcttggagaagaattctgtga |
227 |
Q |
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||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55630909 |
actggcctgaaagtttcactgatgatttatcagatcttgtgaaatcgttcatggagaagaattctgtga |
55630841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 55630662 - 55630564
Alignment:
| Q |
358 |
tgaacttgcaattgaagttgttggtggtgacaaatcttcgcctggattcaaacgcatggtgatgtcacgcttgcgggaaagaggatttgatgctggtaa |
456 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| || |||||| |||||||||||||||| | ||||||||||||||||| || || |||||||||||||| |
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| T |
55630662 |
tgaacttgccattcaagttgttggcggtgataagtcttcgtctggattcaaacgcataatcatgtcacgcttgcgggagagtggttttgatgctggtaa |
55630564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 55630845 - 55630741
Alignment:
| Q |
196 |
tgtgaaatcgttcttggagaagaattctgtgagagcag---------aagaagatgcggttgcttttg---ataaggaggatcgtgattttgagtggtat |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||| ||||| |||| || ||||||||||||||||||||| |
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| T |
55630845 |
tgtgaaatcgttcatggagaagaattctgtgggagcagtacaaggaaaagaagatgcgtttgattttgataataatgatgatcgtgattttgagtggtat |
55630746 |
T |
|
| Q |
284 |
gatta |
288 |
Q |
| |
|
||||| |
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|
| T |
55630745 |
gatta |
55630741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 16433988 - 16433825
Alignment:
| Q |
62 |
atgggaaggattattccggtgaggtttgagagggtagcggcggcgtttgagagtgatgaggtggcgcgtgtgaggctatgtgaaagtagtggaagcgaac |
161 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
16433988 |
atgggaagtgttattccggtgaggattgagaaggtaacggcggcgtttaagagtgatgaggcggcgcgtgggaggctatgtgaaagcagtggaagcgaac |
16433889 |
T |
|
| Q |
162 |
actcacctgaaagttcaac---cgatttatcagatcttgtgaaatcgttcttggagaagaattc |
222 |
Q |
| |
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||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16433888 |
actggcctgaaagtttcactgatgatttatcagatcttgtgaaatcgttcatggagaagaattc |
16433825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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