View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_7 (Length: 478)
Name: NF13389_low_7
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 17995935 - 17996372
Alignment:
| Q |
20 |
tcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccctactatttgccaccaactgaggtgtccaccttctaac |
119 |
Q |
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| T |
17995935 |
tcttgaacaagggttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccatactatctgccaccaactgaggtgtccaccttctaac |
17996034 |
T |
|
| Q |
120 |
cgaagaaaacattgaataacaccaagctagatggctattgtgaactggatcaatatccttcatacattcaatatgcaggagcatctttctgtctcccatc |
219 |
Q |
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| T |
17996035 |
cgaagaaaatat-------caccaagctagatggctattgcgaaccgggtcaatatccttcataccttcaatatgcaaaagcatctttctgtctcccatc |
17996127 |
T |
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| Q |
220 |
tctgtgactttaacaccttgaatgccttccataaccaaagcttgttgcacctccaaaacatcattatgatggaacagttcccctataaaggcccactgca |
319 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||| |||||||| |
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| T |
17996128 |
tctatgactttaacacctcgaatgccttccataaccaaagcttgttgcacctccaaagcatccttctgatggaacagttcccccataaaggtccactgca |
17996227 |
T |
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| Q |
320 |
aatagtccagcatatcctccgatggaagaatttccaatgttggagaaaccccattcataaccggaaaattatccttctccaacgtcaacgcatttttgaa |
419 |
Q |
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||||||| ||||| |||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
17996228 |
aatagtctagcatctccttcgatggaacaatttccaatgttggagcaaccccattcaaaatcggaaaattatccttttccaacgtcaacgcatttttgaa |
17996327 |
T |
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| Q |
420 |
cgatttccccggagtagcggtgacgccaaagccttcctccgcctc |
464 |
Q |
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| T |
17996328 |
cgatttccccggagtagcggtgacgccaaagccttcctccgcctc |
17996372 |
T |
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