View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13389_low_9 (Length: 451)
Name: NF13389_low_9
Description: NF13389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13389_low_9 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 4710 - 4953
Alignment:
| Q |
20 |
catcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacac |
119 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710 |
catcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacac |
4809 |
T |
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| Q |
120 |
aaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4810 |
aaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgaga |
4909 |
T |
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| Q |
220 |
agatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
263 |
Q |
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| T |
4910 |
agatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 357 - 441
Target Start/End: Original strand, 5044 - 5128
Alignment:
| Q |
357 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
441 |
Q |
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| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
5128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 3897054 - 3897297
Alignment:
| Q |
20 |
catcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacac |
119 |
Q |
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| T |
3897054 |
catcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacac |
3897153 |
T |
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| Q |
120 |
aaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897154 |
aaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgaga |
3897253 |
T |
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| Q |
220 |
agatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
263 |
Q |
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| T |
3897254 |
agatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 357 - 441
Target Start/End: Original strand, 3898713 - 3898797
Alignment:
| Q |
357 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
441 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
3898797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
100 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
199 |
Q |
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||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
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| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
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| Q |
200 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
249 |
Q |
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| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 46283571 - 46283490
Alignment:
| Q |
357 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacct |
438 |
Q |
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|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacct |
46283490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
167 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
204 |
Q |
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| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
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