View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1338_high_3 (Length: 320)

Name: NF1338_high_3
Description: NF1338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1338_high_3
NF1338_high_3
[»] chr6 (1 HSPs)
chr6 (16-315)||(20748981-20749280)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 20749280 - 20748981
Alignment:
Q  16 atacatctaacaaaaaatttccttgatattgagtagaaaggtacatgaaaatcttgaaaagaaactcttgcatgtttttctattggaaattgagtataac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20749280 atacatctaacaaaaaatttccttgatattgagtagaaaggtacatgaaaatcttgaaaagaaactcttgcatgtttttctattggaaattgagtataac 20749181  T
Q  116 tcgaaaattggaatgttatgattcttgactagttactatttgaattagtaatttggtaagatacaaagtcttgtgatgacaaatataaggtgttagtaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20749180 tcgaaaattggaatgttatgattcttgactagttactatttgaattagtaatttggtaagatacaaagttttgtgatgacaaatataaggtgttagtaaa 20749081  T
Q  216 tatcatgtgaaagaaacacctaataagacatccccaagcagcaaggtacgtataatattcctttagttgcataaattatttatttgcgaacgatttaatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20749080 tatcatgtgaaagaaacacctaataagacatccccaagcagcaaggtacgtataatattcctttagttgcataaattatttatttgcaaacgatttaatt 20748981  T

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