View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1338_low_3 (Length: 344)
Name: NF1338_low_3
Description: NF1338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1338_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 46566064 - 46565757
Alignment:
| Q |
8 |
agattatacttgacgttcgcgatgacaccgtttcggtccagaatattcgaggcggtgattctgaaacggctttactggctagccgtttggagaaacgtcc |
107 |
Q |
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| T |
46566064 |
agattacacttgacgttcgcgatgacaccgtttcggtccagaatattcgaggcggtgattctgaaacggcgttactggctagccgtttggagaaacgtcc |
46565965 |
T |
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| Q |
108 |
gtcaactttgtccgttaaacttaagcaggtttcgcaggaactgaaacgcatgacttcttcaaagaagttcgatagggttgatagggcgaaatctggtgct |
207 |
Q |
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| T |
46565964 |
gtcaactttgtccgttaaacttaagcaggtttcgcaggaactgaaacgcatgacttcttcaaagaagttcgatagggttgatagggcgaaatctggtgct |
46565865 |
T |
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| Q |
208 |
gctcgtgcactgaaaggacttaagtttatgaccaaaaacgttggtactgatcgtggttggtctcaggtggagaagcgatttgatgaattggaagttgatg |
307 |
Q |
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| T |
46565864 |
gctcgtgcactgaaaggacttaagtttatgaccaaaaacgttggtactgatcgtggttggtctcaggtggagaagcgatttgatgaattggaagttgatg |
46565765 |
T |
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| Q |
308 |
gaaaactc |
315 |
Q |
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| T |
46565764 |
gaaaactc |
46565757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 37062611 - 37062773
Alignment:
| Q |
133 |
caggtttcgcaggaactgaaacgcatgacttcttcaaagaagttcgatagggttgatagggcgaaatctggtgctgctcgtgcactgaaaggacttaagt |
232 |
Q |
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| T |
37062611 |
caggtgtctcaggagctgaagcgcatgacgtcttttaaggcgtttgataaggttgataggtcaaaatctggtgctgctcgtgctctacaaggtcttaagt |
37062710 |
T |
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| Q |
233 |
ttatgaccaaaaacgttggtactgatcgtggttggtctcaggtggagaagcgatttgatgaattgg |
298 |
Q |
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| T |
37062711 |
ttatgacaaaaaacgttggaagtga---aggttggtcccaagttgagaagcgttttgatgagttgg |
37062773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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