View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1338_low_5 (Length: 319)
Name: NF1338_low_5
Description: NF1338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1338_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 41370747 - 41370930
Alignment:
| Q |
30 |
ggataaagatggaattgcagcaaaacggtcgattaataatgatttggttaaaaatattcttccttcacaaaacctagtcctttttgtgcgtttatctccc |
129 |
Q |
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| T |
41370747 |
ggataaagatggaatggcagcaaaacggtcgattaataatgatttggttaaaaatattcttccttcacaaaacctagttctttttctgcgtttatctccc |
41370846 |
T |
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| Q |
130 |
aacttcaaaccctaaactcctaacttttgttttattatttcattgattttccgattaataaaattattctagtaaaataaaggg |
213 |
Q |
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| T |
41370847 |
aacttcaaaccctaaactcctaacttttgttttattatttcattgattttccgattaataaaattattctagtaaaataaaggg |
41370930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 41370993 - 41371028
Alignment:
| Q |
276 |
atcagcatcaatcgtctttttcacgtcagtataatc |
311 |
Q |
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| T |
41370993 |
atcagcatcaatcgtctttttcacgtcagtaaaatc |
41371028 |
T |
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