View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13390_high_4 (Length: 461)

Name: NF13390_high_4
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13390_high_4
NF13390_high_4
[»] chr1 (15 HSPs)
chr1 (15-442)||(28729885-28730316)
chr1 (29-128)||(5698510-5698609)
chr1 (29-128)||(5698128-5698228)
chr1 (29-128)||(14390424-14390524)
chr1 (29-120)||(27667677-27667769)
chr1 (29-107)||(3795982-3796061)
chr1 (27-121)||(4361064-4361159)
chr1 (18-128)||(42628215-42628326)
chr1 (29-121)||(31496612-31496705)
chr1 (40-128)||(39325514-39325603)
chr1 (29-111)||(35179822-35179905)
chr1 (29-79)||(23259087-23259137)
chr1 (29-128)||(9223842-9223942)
chr1 (42-121)||(18039988-18040068)
chr1 (29-128)||(31656371-31656471)
[»] chr5 (5 HSPs)
chr5 (29-128)||(3078538-3078638)
chr5 (29-128)||(1923949-1924049)
chr5 (19-107)||(11575614-11575703)
chr5 (53-128)||(20017303-20017379)
chr5 (29-128)||(13018996-13019096)
[»] chr7 (16 HSPs)
chr7 (29-128)||(35670351-35670451)
chr7 (29-128)||(37658112-37658212)
chr7 (23-128)||(31436244-31436350)
chr7 (29-79)||(44570934-44570984)
chr7 (19-95)||(30999374-30999451)
chr7 (21-120)||(3117305-3117405)
chr7 (29-128)||(9806586-9806686)
chr7 (29-128)||(30582673-30582773)
chr7 (21-128)||(31030761-31030869)
chr7 (29-128)||(40061165-40061265)
chr7 (21-107)||(36121425-36121512)
chr7 (29-79)||(21920843-21920893)
chr7 (42-87)||(42438145-42438190)
chr7 (29-128)||(31969463-31969563)
chr7 (29-128)||(34307117-34307217)
chr7 (24-107)||(43544914-43544998)
[»] chr4 (12 HSPs)
chr4 (29-128)||(19912675-19912775)
chr4 (20-107)||(20986267-20986355)
chr4 (29-128)||(30411249-30411349)
chr4 (29-128)||(55610665-55610765)
chr4 (55-97)||(373652-373694)
chr4 (29-79)||(19869962-19870012)
chr4 (29-128)||(1771837-1771937)
chr4 (29-108)||(55660548-55660628)
chr4 (29-128)||(202292-202392)
chr4 (23-79)||(30653338-30653394)
chr4 (29-128)||(45549655-45549755)
chr4 (31-79)||(55496084-55496132)
[»] chr3 (14 HSPs)
chr3 (21-128)||(32111557-32111665)
chr3 (23-128)||(40980137-40980243)
chr3 (29-128)||(40374505-40374605)
chr3 (46-128)||(32390111-32390194)
chr3 (27-71)||(25999224-25999268)
chr3 (24-111)||(50935710-50935798)
chr3 (29-107)||(34785896-34785975)
chr3 (29-111)||(50938251-50938334)
chr3 (29-79)||(48747406-48747456)
chr3 (20-128)||(36660133-36660242)
chr3 (31-111)||(36806926-36807007)
chr3 (24-120)||(42167337-42167434)
chr3 (24-107)||(43860723-43860807)
chr3 (29-128)||(46668343-46668443)
[»] scaffold0009 (1 HSPs)
scaffold0009 (27-107)||(94422-94503)
[»] chr8 (11 HSPs)
chr8 (20-128)||(18146335-18146444)
chr8 (20-128)||(45069816-45069925)
chr8 (29-128)||(12208808-12208908)
chr8 (29-128)||(12453236-12453336)
chr8 (29-120)||(43150254-43150346)
chr8 (29-128)||(4477616-4477716)
chr8 (29-120)||(43873960-43874052)
chr8 (21-79)||(35160317-35160375)
chr8 (41-114)||(41356304-41356378)
chr8 (29-106)||(53490-53567)
chr8 (24-107)||(38760828-38760912)
[»] chr6 (6 HSPs)
chr6 (29-128)||(1789789-1789889)
chr6 (29-128)||(18368731-18368831)
chr6 (29-121)||(6834050-6834143)
chr6 (20-128)||(18801693-18801802)
chr6 (21-128)||(190917-191025)
chr6 (29-128)||(4976526-4976626)
[»] chr2 (9 HSPs)
chr2 (26-120)||(15265346-15265441)
chr2 (29-107)||(18109733-18109812)
chr2 (29-128)||(1086045-1086145)
chr2 (29-128)||(39532064-39532164)
chr2 (29-97)||(10247411-10247480)
chr2 (18-79)||(45376900-45376961)
chr2 (31-79)||(6432174-6432222)
chr2 (29-128)||(26340031-26340131)
chr2 (29-128)||(40862201-40862300)
[»] scaffold1391 (1 HSPs)
scaffold1391 (29-121)||(1499-1592)
[»] scaffold0115 (2 HSPs)
scaffold0115 (29-128)||(4151-4251)
scaffold0115 (29-128)||(11891-11991)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 28729885 - 28730316
Alignment:
Q  15 atgaactaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgtttgataaaatgagaggtgtttgataacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||  |||||    
T  28729885 atgaactaaggttatgtttggtaaaacaaataagttatcttatagcttattaaactagtttataaatgtgtttgacaaaatgagaggtgtttggaaacaa 28729984  T
Q  115 atttttcacactagatatcttatttccatatgctattctaaggagcttaatgaaatctaaaaatcataacta----atttttaatgtaaaaatgatgaaa 210  Q
     |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||    
T  28729985 gtttttctcactagatagcttatttccatatgctattctaaggagcttaatgaaatctaaaaatcataactacataatttttaatgcaaaaatgatgaaa 28730084  T
Q  211 caatgtcgagaatcattttcctcnnnnnnnnnnnnnnnngaagaaagagagaagtgtgagttgcatctatgatctatgtgagtgagtgtgacagggcgcg 310  Q
    |||||||||||||||||||||||                |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  28730085 caatgtcgagaatcattttcctctttttattttatttttgaagaaagagagaagtgtgagtcgcatctatgatctatgtgagggagtgtgacagggcgcg 28730184  T
Q  311 tatagtatgggattaaggagcgtaacattaatgaatgaatgtggcatccgtttcaaatgtattttcctgttccccgtcactcactcttccctgtctccca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730185 tatagtatgggattaaggagcgtaacattaatgaatgaatgtggcatccgtttcaaatgtattttcctgttccccgtcactcactcttccctgtctccca 28730284  T
Q  411 ttcacagaataagaaagagagagactctgtaa 442  Q
    ||||||||||||||||||||||||||||||||    
T  28730285 ttcacagaataagaaagagagagactctgtaa 28730316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 5698510 - 5698609
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgtttgataaaatgagaggtgtttgataacaaatttttcacactag 128  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||| ||||||| | ||||||||||||||||| ||||||||||| ||  ||||| ||||||    
T  5698510 tgtttggtaacacaaaaaagctagcttatagcttgttggactaacttataagcttgtttgataaaatgagatgtgtttgataaaaagcttttctcactag 5698609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 5698128 - 5698228
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||||||| ||  ||||| |||||    
T  5698128 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttgataaaaagcttttctcacta 5698227  T
Q  128 g 128  Q
    |    
T  5698228 g 5698228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 14390424 - 14390524
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||| | ||||||| ||| || |||||| |||||    
T  14390424 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgaaatgtgtttggtaaaaagtttttctcacta 14390523  T
Q  128 g 128  Q
    |    
T  14390524 g 14390524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 27667677 - 27667769
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattttt 120  Q
    |||||||||| |||||  |||||  ||||||||||||||||||||||||||   || ||||||||||||||| ||||||| ||| ||| ||||    
T  27667677 tgtttggtaacacaaaatagttagtttatagcttattgaactagcttataagtttgttttgataaaatgagatgtgtttggtaaaaaactttt 27667769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 3796061 - 3795982
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| |||||||    
T  3796061 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttg 3795982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 4361159 - 4361064
Alignment:
Q  27 tatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttc 121  Q
    |||||||||||| ||||| |||||| ||||||| |||||| |||||||||||| | || ||| ||| ||||||| ||||||| ||| ||| |||||    
T  4361159 tatgtttggtaacacaaaaaagttagcttatagtttattggactagcttataagcttgttttaatagaatgagatgtgtttggtaaaaaacttttc 4361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 42628326 - 42628215
Alignment:
Q  18 aactaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaat 116  Q
    |||||||| | |||||||||| ||||| ||| ||  ||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||      
T  42628326 aactaaggctctgtttggtaatacaaaaaagctagtttatagcttgttggactagcttataagcttgctttgataaaatgagatgtgtttggtaaaaagc 42628227  T
Q  117 ttttcacactag 128  Q
    ||||| ||||||    
T  42628226 ttttctcactag 42628215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 31496612 - 31496705
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttc 121  Q
    |||||||||| ||| ||||| || |||||||||| ||| |||||||||||||| || ||| ||| ||||||| ||||||| ||| || ||||||    
T  31496612 tgtttggtaacacagataagctagcttatagcttcttggactagcttataaacttgttttaatagaatgagatgtgtttggtaaaaagtttttc 31496705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 39325603 - 39325514
Alignment:
Q  40 acaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacactag 128  Q
    ||||| ||| || |||||||||| |||||||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| ||||||    
T  39325603 acaaaaaagctagcttatagcttgttgaactagcttataagcttgttttgataaaatgagacgtgtttggtaaaaagcttttctcactag 39325514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 35179822 - 35179905
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataa 111  Q
    |||||||||| | ||| ||| || |||||||||| ||| ||||||||||||   || ||||||||||||||| |||||||||||    
T  35179822 tgtttggtaacataaaaaagctagcttatagcttgttggactagcttataagtttgttttgataaaatgagatgtgtttgataa 35179905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 23259087 - 23259137
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||||| || ||||||||| |||||||||| ||| ||||||||||||    
T  23259087 tgtttggtaacacgaataagttagcttatagcttgttggactagcttataa 23259137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 9223842 - 9223942
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||| ||||||| | ||||| |||||||| ||| ||||||| ||| ||  ||||| |||||    
T  9223842 tgtttggtaacacaaaaaagctaacttatagcttgttggactaacttataagcttgttttgataaaataagatgtgtttggtaaaaagcttttctcacta 9223941  T
Q  128 g 128  Q
    |    
T  9223942 g 9223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 18040068 - 18039988
Alignment:
Q  42 aaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttc 121  Q
    |||||||||| |||||| ||| ||| | || ||||||||| ||||| |||||| ||||| ||||||||||| ||| |||||    
T  18040068 aaataagttagcttataccttcttggattaacttataaacttgttttgataaactgagatgtgtttgataaaaaacttttc 18039988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 31656371 - 31656471
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| ||  ||||||||| ||| ||||||||| || | ||||| |||||||||||| ||||||| ||| ||  ||||| |||||    
T  31656371 tgtttggtaacacaaaaaagctagtttatagcttgttggactagcttacaagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 31656470  T
Q  128 g 128  Q
    |    
T  31656471 g 31656471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 3078638 - 3078538
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| |||||| |||||| ||| ||| |||||||||||||| || ||||||||||||||| ||||||| ||| || |||||| |||||    
T  3078638 tgtttggtaacacaaaaaagttagcttataacttgttggactagcttataaacttgttttgataaaatgagacgtgtttggtaaaaagtttttctcacta 3078539  T
Q  128 g 128  Q
    |    
T  3078538 g 3078538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 1923949 - 1924049
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  1923949 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgctttgataaaatgagacgtgtttggtaaaaagcttttctcacta 1924048  T
Q  128 g 128  Q
    |    
T  1924049 g 1924049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 11575614 - 11575703
Alignment:
Q  19 actaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    ||||||||| |||||||||| ||||| ||| || |||||||||| ||| ||||||||||||   || ||||||| ||||||| |||||||    
T  11575614 actaaggttgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagtttgttttgatagaatgagatgtgtttg 11575703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 20017379 - 20017303
Alignment:
Q  53 cttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacactag 128  Q
    |||||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||| ||| || |||||| ||||||    
T  20017379 cttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagtttttctcactag 20017303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 13018996 - 13019096
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||| ||| ||| ||||||||||||   || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  13018996 tgtttggtaacacaaaaaagctagcttataacttgttggactagcttataagtttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 13019095  T
Q  128 g 128  Q
    |    
T  13019096 g 13019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 35670451 - 35670351
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||| ||||| |||||    
T  35670451 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaaacttttctcacta 35670352  T
Q  128 g 128  Q
    |    
T  35670351 g 35670351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 37658212 - 37658112
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  37658212 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 37658113  T
Q  128 g 128  Q
    |    
T  37658112 g 37658112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 31436350 - 31436244
Alignment:
Q  23 aggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttc 121  Q
    ||||| ||||| |||| ||||| ||| || |||||||||| ||| |||| ||||||||| ||||| |||||||||| | ||||||| ||| || ||||||    
T  31436350 aggttgtgtttcgtaacacaaaaaagctagcttatagcttgttggactaacttataaacttgttttgataaaatgaaatgtgtttggtaaaaagtttttc 31436251  T
Q  122 acactag 128  Q
     ||||||    
T  31436250 tcactag 31436244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 44570934 - 44570984
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||||| ||||| |||||| |||||||||||||| ||||||||||||    
T  44570934 tgtttggtaacacaaaaaagttagcttatagcttattggactagcttataa 44570984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 30999451 - 30999374
Alignment:
Q  19 actaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaat 95  Q
    ||||| ||| |||||||||| ||||||||||||  ||||||||||||| ||||||| |||| | || |||||||||||    
T  30999451 actaaagttgtgtttggtaacacaaataagttagtttatagcttattggactagctcataagcttgttttgataaaat 30999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 3117405 - 3117305
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttt 119  Q
    ||||||| |||||||||| | |||||||||| ||||||| |||||  | |||||||||| | ||||| ||||  |||||| ||||||||||| || ||||    
T  3117405 taaggttgtgtttggtaacaaaaataagttagcttatagtttattatattagcttataagcttgttttgataggatgagacgtgtttgataaaaagtttt 3117306  T
Q  120 t 120  Q
    |    
T  3117305 t 3117305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 9806686 - 9806586
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| | ||| ||||||  ||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  9806686 tgtttggtaacataaaaaagttagtttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 9806587  T
Q  128 g 128  Q
    |    
T  9806586 g 9806586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 30582673 - 30582773
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||| | ||||||| ||| ||  ||||| |||||    
T  30582673 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgatatgtgtttggtaaaaagcttttctcacta 30582772  T
Q  128 g 128  Q
    |    
T  30582773 g 30582773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 31030869 - 31030761
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttt 119  Q
    |||||||||||||||||| | ||| ||| ||  |||||| || ||| |||||||||||| | || ||||||||||| ||| ||||||| ||| || ||||    
T  31030869 taaggttatgtttggtaacataaaaaagctaatttatagtttgttggactagcttataagcttgttttgataaaataagatgtgtttggtaaaaagtttt 31030770  T
Q  120 tcacactag 128  Q
    || ||||||    
T  31030769 tctcactag 31030761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 40061165 - 40061265
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||| ||||||||||| ||||||| ||| ||  ||||| |||||    
T  40061165 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcacta 40061264  T
Q  128 g 128  Q
    |    
T  40061265 g 40061265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 36121425 - 36121512
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    ||||||| |||||||||| ||||| ||| || |||||||||||||| | |||||||||| | || ||||||| ||| ||| |||||||    
T  36121425 taaggttgtgtttggtaacacaaagaagatagcttatagcttattggattagcttataagcttgttttgatagaataagatgtgtttg 36121512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 21920893 - 21920843
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||||| ||||||||| || |||||||||| ||| ||||||||||||    
T  21920893 tgtttggtaacacaaataagctagcttatagcttgttggactagcttataa 21920843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 42438145 - 42438190
Alignment:
Q  42 aaataagttatcttatagcttattgaactagcttataaacgtgttt 87  Q
    ||||||||||  |||||||||||||||||| ||||||||| |||||    
T  42438145 aaataagttagtttatagcttattgaactaacttataaacttgttt 42438190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 31969563 - 31969463
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| |||||| ||||||| || ||| |||| ||||||| | ||||| |||||||||| | ||||||| ||| ||  ||||| |||||    
T  31969563 tgtttggtaacacaaaaaagttagcttatagattgttggactaacttataagcttgttttgataaaatgaaatgtgtttggtaaaaagcttttctcacta 31969464  T
Q  128 g 128  Q
    |    
T  31969463 g 31969463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 34307117 - 34307217
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| | ||||||||||  |||||| || ||| ||||  |||||||  ||||| |||||||| ||| |||||||| || ||| |||||||||||    
T  34307117 tgtttggtaacataaataagttagtttatagtttgttgtactaatttataaatttgttttgataaaataagatgtgtttgaaaaaaaacttttcacacta 34307216  T
Q  128 g 128  Q
    |    
T  34307217 g 34307217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 43544998 - 43544914
Alignment:
Q  24 ggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||| |||||||||| || |||||| || |||||||||| ||| |||||||||||| | || ||||||| ||| ||| |||||||    
T  43544998 ggttgtgtttggtaacacgaataagctaacttatagcttgttggactagcttataagcttgttttgatataataagatgtgtttg 43544914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 19912675 - 19912775
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| || |||||| |||||    
T  19912675 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagtttttctcacta 19912774  T
Q  128 g 128  Q
    |    
T  19912775 g 19912775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 20986267 - 20986355
Alignment:
Q  20 ctaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttg 107  Q
    |||||| | |||||||||| | ||||||| || |||||||||| ||| |||| ||||||||| ||||| |||||||||||| |||||||    
T  20986267 ctaaggctgtgtttggtaacataaataagctaacttatagcttgttggactaacttataaacttgttttgataaaatgagatgtgtttg 20986355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 30411349 - 30411249
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  30411349 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 30411250  T
Q  128 g 128  Q
    |    
T  30411249 g 30411249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 55610665 - 55610765
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||  || |||||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||| ||| ||| ||||| |||||    
T  55610665 tgtttggtaacacaaaaaaactagcttatagcttgttgtactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaaacttttctcacta 55610764  T
Q  128 g 128  Q
    |    
T  55610765 g 55610765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 373652 - 373694
Alignment:
Q  55 tatagcttattgaactagcttataaacgtgtttgataaaatga 97  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  373652 tatagcttattgaactagtttataaacttgtttgataaaatga 373694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 19869962 - 19870012
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||||| || |||||| || |||||||||||||||||||||||||||    
T  19869962 tgtttggtaacacgaataagctagcttatagcttattgaactagcttataa 19870012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 1771937 - 1771837
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||| ||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  1771937 tgtttgataacacaaaaaagatagcttatagcttgttggactagcttataagcttgctttgataaaatgagatgtgtttggtaaaaagcttttctcacta 1771838  T
Q  128 g 128  Q
    |    
T  1771837 g 1771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 55660548 - 55660628
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttga 108  Q
    |||||||||| | ||||||| || |||||||||| ||| |||||||||||||| || |||||| |||||||| ||| ||||    
T  55660548 tgtttggtaacataaataagctagcttatagcttgttggactagcttataaacttgttttgatgaaatgagatgtgattga 55660628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 202292 - 202392
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| | |||||||||| | || ||||||||||| ||| ||||||| ||| ||  ||||| |||||    
T  202292 tgtttggtaacacaaaaaagctagcttatagcttgttggattagcttataagcttgctttgataaaataagacgtgtttggtaaaaagcttttctcacta 202391  T
Q  128 g 128  Q
    |    
T  202392 g 202392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 30653394 - 30653338
Alignment:
Q  23 aggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    ||||| |||||||||| ||||| |||||| ||||| |||| ||| ||||||||||||    
T  30653394 aggttgtgtttggtaacacaaaaaagttagcttatggcttgttggactagcttataa 30653338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 45549655 - 45549755
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| |||  ||||||||||| | || ||||||||||||| | ||||||| ||| ||  ||||| |||||    
T  45549655 tgtttggtaacacaaaaaagctagcttatagcttgttgggctagcttataagcttgttttgataaaatgaaatgtgtttggtaaaaagcttttctcacta 45549754  T
Q  128 g 128  Q
    |    
T  45549755 g 45549755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 55496132 - 55496084
Alignment:
Q  31 tttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||| ||||| |||||| |||||||||| ||| ||||||||||||    
T  55496132 tttggtaacacaaaaaagttagcttatagcttgttggactagcttataa 55496084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 32111665 - 32111557
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttt 119  Q
    ||||||| |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  |||    
T  32111665 taaggttgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttt 32111566  T
Q  120 tcacactag 128  Q
    || ||||||    
T  32111565 tctcactag 32111557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 40980243 - 40980137
Alignment:
Q  23 aggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttc 121  Q
    ||||| |||||||||| ||||| ||  || ||||||| || |||||||||||||||||| || ||||||||||||||| ||||||| ||| ||  |||||    
T  40980243 aggttgtgtttggtaacacaaaaaaactagcttatagtttgttgaactagcttataaacttgttttgataaaatgagatgtgtttggtaaaaagcttttc 40980144  T
Q  122 acactag 128  Q
     ||||||    
T  40980143 tcactag 40980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 40374605 - 40374505
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  40374605 tgtttggtaacacaaaaaagctaacttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 40374506  T
Q  128 g 128  Q
    |    
T  40374505 g 40374505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 32390194 - 32390111
Alignment:
Q  46 aagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacactag 128  Q
    |||||| |||||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||| ||| || |||||| ||||||    
T  32390194 aagttagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagtttttctcactag 32390111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 25999268 - 25999224
Alignment:
Q  27 tatgtttggtaaaacaaataagttatcttatagcttattgaacta 71  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||    
T  25999268 tatgtttggtaacacaaaaaagttagcttatagcttattgaacta 25999224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 50935710 - 50935798
Alignment:
Q  24 ggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataa 111  Q
    |||| |||||||||| || |||||| || |||||||||||||| |||||||||||| | || ||||||| ||| | | |||||||||||    
T  50935710 ggttgtgtttggtaacacgaataagctagcttatagcttattggactagcttataagcttgttttgatataataatatgtgtttgataa 50935798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 34785975 - 34785896
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||||||||| ||| ||||| || |||||||||||||| |||||||||||| | || ||||||| ||| ||| |||||||    
T  34785975 tgtttggtaacacacataagctagcttatagcttattggactagcttataagcttgttttgatagaataagacgtgtttg 34785896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 50938334 - 50938251
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataa 111  Q
    |||||||||| || ||||||||| |||||||||| ||| |||||||||||| | || ||| ||| ||| ||| |||||||||||    
T  50938334 tgtttggtaacacgaataagttagcttatagcttgttggactagcttataaccttgtttttatataataagatgtgtttgataa 50938251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 48747406 - 48747456
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||||| ||||| |||||| ||||||| |||||| ||||||||||||    
T  48747406 tgtttggtaacacaaaaaagttagcttatagtttattggactagcttataa 48747456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 36660242 - 36660133
Alignment:
Q  20 ctaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattt 118  Q
    |||||| |||||||||||| ||||| ||| || ||||||| || ||| | |||||||||| | || |||||||||||||||  |||||| ||| ||  ||    
T  36660242 ctaaggctatgtttggtaacacaaaaaagctagcttatagtttgttggattagcttataagcttgttttgataaaatgagacttgtttggtaaaaagctt 36660143  T
Q  119 ttcacactag 128  Q
    ||| ||||||    
T  36660142 ttctcactag 36660133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 36806926 - 36807007
Alignment:
Q  31 tttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataa 111  Q
    |||||||| ||||| ||| ||  || |||||| ||| |||||||||||| | ||||| |||||||||||| |||||||||||    
T  36806926 tttggtaacacaaaaaagctagtttttagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttgataa 36807007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 42167434 - 42167337
Alignment:
Q  24 ggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattttt 120  Q
    |||| |||||||||| || |||||| || |||||||||| ||| |||||||||||| | || ||||||| ||| ||| ||||||| ||| || |||||    
T  42167434 ggttgtgtttggtaacacgaataagctagcttatagcttgttggactagcttataagcttgttttgatataataagatgtgtttggtaaaaagttttt 42167337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 43860723 - 43860807
Alignment:
Q  24 ggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||| |||||||||| || |||||| || |||||||||| ||| |||||||||||| | || ||||||| ||| ||| |||||||    
T  43860723 ggttgtgtttggtaatacgaataagctagcttatagcttgttggactagcttataagcttgttttgatataataagatgtgtttg 43860807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 46668343 - 46668443
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| | ||| ||| || |||||||||| ||| |||| ||||||| | ||||| |||||||| ||| ||||||| ||| ||  |||||||||||    
T  46668343 tgtttggtaacataaaaaagctagcttatagcttgttggactaacttataagcttgttttgataaaataagatgtgtttggtaaaaagcttttcacacta 46668442  T
Q  128 g 128  Q
    |    
T  46668443 g 46668443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 94503 - 94422
Alignment:
Q  27 tatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||||||||||| || |||||| || |||||||||| |||||||||||||||||| || ||||||| ||| ||| |||||||    
T  94503 tatgtttggtaacacgaataagctagcttatagcttgttgaactagcttataaacttgttttgatataataagatgtgtttg 94422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 18146335 - 18146444
Alignment:
Q  20 ctaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattt 118  Q
    |||||| | |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||    
T  18146335 ctaaggctgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagctt 18146434  T
Q  119 ttcacactag 128  Q
    ||| ||||||    
T  18146435 ttctcactag 18146444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 45069925 - 45069816
Alignment:
Q  20 ctaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattt 118  Q
    |||||| | |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||    
T  45069925 ctaagggtgtgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagctt 45069826  T
Q  119 ttcacactag 128  Q
    ||| ||||||    
T  45069825 ttctcactag 45069816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 12208808 - 12208908
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  12208808 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagacgtgtttggtaaaaagcttttctcacta 12208907  T
Q  128 g 128  Q
    |    
T  12208908 g 12208908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 12453236 - 12453336
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  12453236 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagacgtgtttggtaaaaagcttttctcacta 12453335  T
Q  128 g 128  Q
    |    
T  12453336 g 12453336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 43150254 - 43150346
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattttt 120  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||| ||||    
T  43150254 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaaactttt 43150346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 4477716 - 4477616
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| |||||| |||||||||| ||| ||||| ||||||   ||||| |||||||||| | ||||||||||| ||  ||||| |||||    
T  4477716 tgtttggtaacacaaaaaagttagcttatagcttgttggactagattataagtttgttttgataaaatgaaatgtgtttgataaaaagcttttctcacta 4477617  T
Q  128 g 128  Q
    |    
T  4477616 g 4477616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 43873960 - 43874052
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattttt 120  Q
    |||||||||  ||||| ||| ||  ||||||||| |||||||||||||||| | || ||||||||||||||| ||||||| ||| ||| ||||    
T  43873960 tgtttggtaccacaaaaaagctagtttatagcttgttgaactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaaactttt 43874052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 35160375 - 35160317
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    ||||||| |||||||||| ||||| ||| || |||||||||||||| | ||||||||||    
T  35160375 taaggttgtgtttggtaacacaaaaaagctagcttatagcttattggattagcttataa 35160317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 41356304 - 41356378
Alignment:
Q  41 caaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaa 114  Q
    |||| |||||| | |||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||| ||||||    
T  41356304 caaaaaagttagcatatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaacaa 41356378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 53567 - 53490
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgtttgataaaatgagaggtgttt 106  Q
    ||||| |||| ||||||||| || |||||||||| ||||| || |||||||   ||||||||||||| ||| ||||||    
T  53567 tgttttgtaacacaaataagctagcttatagctttttgaattaacttataagtttgtttgataaaattagatgtgttt 53490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 38760912 - 38760828
Alignment:
Q  24 ggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||| |||||||||| ||||||||  ||  ||||||||| ||| |||||||||||| | || ||||||| ||||||| |||||||    
T  38760912 ggttgtgtttggtaatacaaataaactagtttatagcttgttggactagcttataagcttgttttgatagaatgagatgtgtttg 38760828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 1789789 - 1789889
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  1789789 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagacgtgtttggtaaaaagcttttctcacta 1789888  T
Q  128 g 128  Q
    |    
T  1789889 g 1789889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 18368831 - 18368731
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  18368831 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 18368732  T
Q  128 g 128  Q
    |    
T  18368731 g 18368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 6834143 - 6834050
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgtttgat-aaaatgagaggtgtttgataacaaatttttc 121  Q
    |||||||||| | ||||||| |||||||||| || |||||||||||||||| | |||| ||| |||| | || ||||||| ||||||| |||||    
T  6834143 tgtttggtaacataaataagctatcttatagtttgttgaactagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaaacttttc 6834050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 18801693 - 18801802
Alignment:
Q  20 ctaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaattt 118  Q
    |||||| | |||||||||| ||||| ||| || |||||||||| ||| |||| ||||||| | ||||| |||||||||||| ||||||| ||| ||  ||    
T  18801693 ctaaggctgtgtttggtaacacaaaaaagctagcttatagcttgttggactaacttataagcttgttttgataaaatgagacgtgtttggtaaaaagctt 18801792  T
Q  119 ttcacactag 128  Q
    ||| ||||||    
T  18801793 ttctcactag 18801802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 190917 - 191025
Alignment:
Q  21 taaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttt 119  Q
    ||||||| | |||| ||| ||||| ||||||  ||||||||| ||| ||||| |||||| | ||||| |||||||||||| ||||||| ||| ||  |||    
T  190917 taaggttgtatttgataacacaaaaaagttagtttatagcttgttggactagtttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttt 191016  T
Q  120 tcacactag 128  Q
    || ||||||    
T  191017 tctcactag 191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 4976526 - 4976626
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||  || |||||||| | ||| |||||||||||| | ||||| |||||||||||| ||||||| ||| ||  ||||| |||||    
T  4976526 tgtttggtaacacaaaaaaactagcttatagcctgttggactagcttataagcttgttttgataaaatgagacgtgtttggtaaaaagcttttctcacta 4976625  T
Q  128 g 128  Q
    |    
T  4976626 g 4976626  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 15265441 - 15265346
Alignment:
Q  26 ttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaattttt 120  Q
    ||||||||||||| |||||||||||| |||||||||| |||  ||||||||||| | || ||| ||| ||||||| ||||||| ||| || |||||    
T  15265441 ttatgtttggtaacacaaataagttagcttatagcttcttgggctagcttataagcttgttttaatagaatgagacgtgtttggtaaaaacttttt 15265346  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 18109812 - 18109733
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttg 107  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||||||||||||||| |||||||    
T  18109812 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttg 18109733  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 1086045 - 1086145
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||||||| || |||||||||| || ||||| ||||||| | ||||| |||||||| ||| ||||||| ||  ||| ||||| |||||    
T  1086045 tgtttggtaacacaaataagctagcttatagcttgttaaactaacttataagcttgttttgataaaataagatgtgtttggtataaaacttttcccacta 1086144  T
Q  128 g 128  Q
    |    
T  1086145 g 1086145  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 39532064 - 39532164
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| || ||| |||||||||| ||| ||||||||||||   || ||||||||||||||| ||||||| ||| ||  ||||| |||||    
T  39532064 tgtttggtaacacaaaaaaattagcttatagcttgttggactagcttataagtttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 39532163  T
Q  128 g 128  Q
    |    
T  39532164 g 39532164  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 10247480 - 10247411
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatga 97  Q
    |||||||||| ||||| |||||| ||||||| || ||| |||||||||||| | || |||||||||||||    
T  10247480 tgtttggtaacacaaaaaagttagcttatagtttgttggactagcttataagcttgttttgataaaatga 10247411  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 45376900 - 45376961
Alignment:
Q  18 aactaaggttatgtttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||| | |||||||||| ||||||||| ||  ||||||||| ||| ||||||||||||    
T  45376900 aactaaggctgtgtttggtaacacaaataagctagtttatagcttgttggactagcttataa 45376961  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 6432174 - 6432222
Alignment:
Q  31 tttggtaaaacaaataagttatcttatagcttattgaactagcttataa 79  Q
    |||||||| ||||||||| || |||||||||| ||| ||||||||||||    
T  6432174 tttggtaacacaaataagctagcttatagcttgttggactagcttataa 6432222  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 26340131 - 26340031
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||| ||| ||| |||||||||||| | || |||||||||||||||  |||||| ||| ||  ||||| |||||    
T  26340131 tgtttggtaacacaaaaaagctaacttataacttgttggactagcttataagcttgttttgataaaatgagatatgtttggtaaaaagcttttctcacta 26340032  T
Q  128 g 128  Q
    |    
T  26340031 g 26340031  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 40862300 - 40862201
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgttt-gataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| ||  ||||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||| ||| ||  ||||| |||||    
T  40862300 tgtttggtaacacaaa-aagctagtttatagcttgttggactagcttataagcttgttttgataaaatgagatgtgtttggtaaaaagcttttctcacta 40862202  T

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Target: scaffold1391 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 1592 - 1499
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtgtttgat-aaaatgagaggtgtttgataacaaatttttc 121  Q
    |||||||||| | ||||||| |||||||||| || |||||||||||||||| | |||| ||| |||| | || ||||||| ||||||| |||||    
T  1592 tgtttggtaacataaataagctatcttatagtttgttgaactagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaaacttttc 1499  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 4151 - 4251
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||| ||||||||||| ||||||| ||| ||  ||||| |||||    
T  4151 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcacta 4250  T
Q  128 g 128  Q
    |    
T  4251 g 4251  T

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Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 11891 - 11991
Alignment:
Q  29 tgtttggtaaaacaaataagttatcttatagcttattgaactagcttataaacgtg-tttgataaaatgagaggtgtttgataacaaatttttcacacta 127  Q
    |||||||||| ||||| ||| || |||||||||| ||| |||||||||||| | || ||| ||||||||||| ||||||| ||| ||  ||||| |||||    
T  11891 tgtttggtaacacaaaaaagctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcacta 11990  T
Q  128 g 128  Q
    |    
T  11991 g 11991  T

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