View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13390_high_5 (Length: 458)
Name: NF13390_high_5
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 50921757 - 50922187
Alignment:
| Q |
11 |
catcatcataaccagatcagcattgcccccctttacaagctcagagaatacttttcgaaaatggctagcaacacctttgaaagtttgttctattgattca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
50921757 |
catcatcataaccagatcagcattgcccccctttacaagctcagagaatactcttcgaaaatggctagcaacacctttgaaagttcgttctactgattca |
50921856 |
T |
|
| Q |
111 |
tctttccgttgatcaagcagtgatattagctcttttataacctgcaattatttaatagnnnnnnngtagaacaattcagcaatgtttcatacaatacaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50921857 |
tctttccgttgatcaagcagtgatattagctcttttataacctgcaattatttaatagaaaaaaagtagaacaatttagcaatgtttcatacaatacaat |
50921956 |
T |
|
| Q |
211 |
cacaaattcaaaagttggcattgagtcagtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50921957 |
cacaaattcaaaagttggcattgagtcagtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcaga |
50922056 |
T |
|
| Q |
311 |
aaatgtaaactcgataagaaaaataacacaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaac |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50922057 |
aaatataaactcgataagaaaaataacacaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaac |
50922156 |
T |
|
| Q |
411 |
tttcaccgccaaaatcaattgtttgaaaagc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50922157 |
tttcaccgccaaaatcaattgtttgaaaagc |
50922187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 20743250 - 20742897
Alignment:
| Q |
13 |
tcatcataaccagatcagcattgcccccctttacaagctcagagaatacttttcgaaaatggctagcaacacctttgaaagtttgttctattgattcatc |
112 |
Q |
| |
|
||||||||||||||| | ||| |||||||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
20743250 |
tcatcataaccagatgaccatggcccccctgtacaagttcagagaatacttctcggaaatgcctagcaacacctttgaaagtgcgctctattgattcatc |
20743151 |
T |
|
| Q |
113 |
tttccgttgatcaagcagtgatattagctcttttataacctgcaattatttaatagnnnnnnngt-agaacaattcagcaatgtttcatacaatacaatc |
211 |
Q |
| |
|
||||||||||| || ||||||||||||| | || |||||||||||||| | || | || || | ||||||||| ||||||||||||| |
|
|
| T |
20743150 |
cttccgttgatctagacttgatattagctctctgattttctgcaattatttaacggcaaaaaagtcaaaaaaaattagcaatgttgtatacaatacaatc |
20743051 |
T |
|
| Q |
212 |
acaaattcaaaagttggcattgagtcagtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaa |
311 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| || |
|
|
| T |
20743050 |
acaaatgcaaaagttggaattgaatcagtcctacactcaaacccaaacttaaaaccaaaaatcacattaaaactacattacagggcatgatacatcaaaa |
20742951 |
T |
|
| Q |
312 |
aatgtaaactcgataagaaaaataacacaaaaatatgttattccagatgcaggt |
365 |
Q |
| |
|
|||| |||||| || | || |||| |||||| ||| || |||||| |||||||| |
|
|
| T |
20742950 |
aatggaaactcaatcaaaagaatatcacaaatataggtcattccacatgcaggt |
20742897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University