View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13390_high_6 (Length: 412)
Name: NF13390_high_6
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 19166833 - 19166429
Alignment:
| Q |
19 |
cctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttcttcagcaaactggtactcaatcacccccttattaatcaaattgccctct |
118 |
Q |
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| T |
19166833 |
cctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttcttcagcaaactggtactcaatcacccccttattaatcaaattgccctct |
19166734 |
T |
|
| Q |
119 |
gaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcgacggatttaata---------------------gtaaggacgacgactt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
19166733 |
gaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcgacggatttaataaccttcccgtcgtcagcaatagtaaggacgacgactt |
19166634 |
T |
|
| Q |
198 |
ccttgttctttggaactgccatccctccggcaccctccttcaataactgtgtctgctgcccatcatacccc-atccgaacctccttctcagctccactgt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||| | |
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| T |
19166633 |
ccttgttctttggaactgccatccctccggcaccctccttcaataaccgtgtctgctgcccatcatacccccatcagaacctccttctcagccccactat |
19166534 |
T |
|
| Q |
297 |
caccgttatccctcaccacgcctttcctgaacctcacactttttctccctccccgcttcttccccttacaaccgtcgcagctccctcacgctttctcaca |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166533 |
caccgttatccctcaccacgcctttcctgaacctcgcactttttctccctccccgcttcttccccttacaaccgtcgcagctccctcacgctttctcaca |
19166434 |
T |
|
| Q |
397 |
ttctt |
401 |
Q |
| |
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||||| |
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| T |
19166433 |
ttctt |
19166429 |
T |
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