View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13390_low_1 (Length: 629)
Name: NF13390_low_1
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 325 - 521
Target Start/End: Original strand, 41866123 - 41866319
Alignment:
| Q |
325 |
atgaaataatggcttagaacagaagcaaaatggtggtagcaatagagagataaaaagatacacaaattgatttcacattggatagaatggaaaagagtaa |
424 |
Q |
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| T |
41866123 |
atgaaataatggcttagaacagaagcaaaatggtggtagcaatagagagataaaaagatacacaaactgttttcacattggatagaatggaaaagagtaa |
41866222 |
T |
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| Q |
425 |
aattcaaacgtacaaggatggtattgcaagcagttatggtattttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
521 |
Q |
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| T |
41866223 |
aattcaaacgtacagggatggtattgcaagcagttatggtattttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
41866319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 41865961 - 41866083
Alignment:
| Q |
209 |
tatatatgaagttgtaaagtcaacaaaaaattgttgaagtattcaaatcaatgagtatttgccacaaagttcaaataaggctagtaaggcttataaaata |
308 |
Q |
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| T |
41865961 |
tatatatgaagttgtaaagtcaacaaaaaattgttgaagtattcaaatcaatgagtatttgccacaaagttcaaataaggctaataaggctaataaaata |
41866060 |
T |
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| Q |
309 |
tgaagaaaaataaagaatgaaat |
331 |
Q |
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| T |
41866061 |
tgaagaaaaataaagaatgaaat |
41866083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 41865014 - 41865106
Alignment:
| Q |
17 |
atcaccgaaagttacataatggaaggtagagaagaaagttggcgcaaagatggaagtgtcaatgtaaatctcgactatcaaaatactgctcaa |
109 |
Q |
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| T |
41865014 |
atcaccggaaattacataatggaaggtagagaagaaagttggcgcaaagatggaagtctcaatgtaaatctcgactatcaaaacactgctcaa |
41865106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 41865199 - 41865282
Alignment:
| Q |
127 |
taataatggcttgattacacatatttttaatgcatcaattcagattgaaattaactaaaattaaaattaccaatgcataaatta |
210 |
Q |
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| T |
41865199 |
taataatggcttgattacgcatatttctaatgcattaactcagattgaaattaactcaaattaaaattacaagtgcataaatta |
41865282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 53005231 - 53005127
Alignment:
| Q |
127 |
taataatggcttgattacacatatttttaatgcatcaattcagattgaaattaactaaaattaaaattaccaatgcataaattatatatgaagttgtaaa |
226 |
Q |
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| T |
53005231 |
taataatggcttgattacacataattccaatgcaataactccgattgaaattaactcaaattaaaattaccaatgcaaaaattgtatatgaaattttaaa |
53005132 |
T |
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| Q |
227 |
gtcaa |
231 |
Q |
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||||| |
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| T |
53005131 |
gtcaa |
53005127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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