View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13390_low_11 (Length: 343)
Name: NF13390_low_11
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 4974773 - 4974454
Alignment:
| Q |
18 |
atataccactctagttatatctttgaagaggatagagagagtcttgttgaatgttgatttaaaacacagtgagatagaaactgatttaagtagcctccac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4974773 |
atataccactctagttatatctttgaagaggatagagagagtcttgttgaatgttgat----aacacagtgagatagaaactgatttaagtagcctccac |
4974678 |
T |
|
| Q |
118 |
agataatatctcaagttcagcccaccatagtggtgagagtcttggaacagcttgctcaggtgttacacaaagcacttcccttaatctggaagttatgtct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4974677 |
agataatatctcaagttcagcccaccatagtggtgagagtcttggaacagcttgctcaggtgttacacaaaacacttcccttaatctggaagttatgtct |
4974578 |
T |
|
| Q |
218 |
ctcattgtaggtctcatctttggatcaggttggatgcacccttgaatcacttcacaaattacatcaagttcattgtccttgaatgattgcagacttggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4974577 |
ctcattgtaggtctcatctttggatcaggttggatgcacccttgaatcacttcacaaattacatcaagttcattgtcctttaatgattgcagacttggat |
4974478 |
T |
|
| Q |
318 |
caatcatgtagcctatgcttctcc |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
4974477 |
caatcatgtagcctatgcttctcc |
4974454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 4992681 - 4992362
Alignment:
| Q |
18 |
atataccactctagttatatctttgaagaggatagagagagtcttgttgaatgttgatttaaaacacagtgagatagaaactgatttaagtagcctccac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4992681 |
atataccactctagttatatctttgaagaggatagagagagtcttgttgaatgttgat----aacacagtgagatagaaactgatttaagtagcctccac |
4992586 |
T |
|
| Q |
118 |
agataatatctcaagttcagcccaccatagtggtgagagtcttggaacagcttgctcaggtgttacacaaagcacttcccttaatctggaagttatgtct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4992585 |
agataatatctcaagttcagcccaccatagtggtgagagtcttggaacagcttgctcaggtgttacacaaaacacttcccttaatctggaagttatgtct |
4992486 |
T |
|
| Q |
218 |
ctcattgtaggtctcatctttggatcaggttggatgcacccttgaatcacttcacaaattacatcaagttcattgtccttgaatgattgcagacttggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4992485 |
ctcattgtaggtctcatctttggatcaggttggatgcacccttgaatcacttcacaaattacatcaagttcattgtcctttaatgattgcagacttggat |
4992386 |
T |
|
| Q |
318 |
caatcatgtagcctatgcttctcc |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
4992385 |
caatcatgtagcctatgcttctcc |
4992362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 35831220 - 35831314
Alignment:
| Q |
104 |
taagtagcctccacagataatatctcaagttcagcccaccatagtggtgagagtcttggaacagcttgctcaggtgttacacaaagcacttccct |
198 |
Q |
| |
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||||| |||||||| || || ||||| |||||||||||||| ||||| || |||||||| || ||||| ||||||| || | ||||||||||||| |
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| T |
35831220 |
taagtggcctccaccgacaagatctcgagttcagcccaccagagtggagaaagtcttggtactgcttgatcaggtgatatagaaagcacttccct |
35831314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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