View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13390_low_14 (Length: 249)
Name: NF13390_low_14
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38636060 - 38636302
Alignment:
| Q |
1 |
tcagacattaattcactgaacattttccagagaatcatgtaaaccttaatactcaactaaaccaccctcagatttcatttcaaaatcaatgaaaatttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636060 |
tcagacattaattcactgaacattttccagagaatcacgtaaaccctaatacttaactaaaccaccctcagatttcatttcaaaatcaatgaaaatttga |
38636159 |
T |
|
| Q |
101 |
tagacccatttacacactgaacaaataatcacaaaaagattcaaactttgattgataaataaaaaatcaacattttctagaaaattatataattcgtaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636160 |
tagacccatttacacactgaacaaataatcacaaaaagattcaaactttgattgataaataaaaaatcaacattttctagaaaattatataattcgtaaa |
38636259 |
T |
|
| Q |
201 |
tccttaataaaaactaccaaatcaccctcatatttcatctcag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636260 |
tccttaataaaaactaccaaatcaccctcatatttcatctcag |
38636302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University