View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13390_low_2 (Length: 602)
Name: NF13390_low_2
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_2 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 34561647 - 34561045
Alignment:
| Q |
18 |
agctgctacaaacaaatcttttctcttgaagacaacagtacatgtcaattgtcaaggtacattgatttggctttattttgtgacaagtagtgacaaattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34561647 |
agctgctacaaacaaatcttttctcttgaaaacaacagtacatgtcaattgtcaaggtacattgatttggctttattttgtgacaagtactgacaaattt |
34561548 |
T |
|
| Q |
118 |
gatgttatgttttcaattgctattgcaatcttccatcatgaaactgaatggttttaaattctctgtatcctaaactagcaatattttagtctgtgacc-- |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561547 |
gatgttatgttttcaattgctattgcaatcttccatcatgaaactgaatggttttaaattctctgtatcctaaactagcaatattttagtctgtgaccat |
34561448 |
T |
|
| Q |
216 |
-----ttgttagtttgttaattcaagtta----------------atcaagtttgttttattaaatcatatgtcagtcaagttagtttttagttggttac |
294 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561447 |
ggaacttgttagtttgttaattcaagttagtgattagtgattttaatcaagtttgttttattaaatcatatgtcagtcaagttagtttttagttggttac |
34561348 |
T |
|
| Q |
295 |
aagtttgttacgnnnnnnnnnnacttgtttgtagcataagatagttagggataagtgattacttgttccttaagccacctaacatttagcatgtttataa |
394 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561347 |
aagtttgttacgttttttttt-acttgtttgtagcataagatagttagggataagtgattacttgttccttaagccacctaacatttagcatgtttataa |
34561249 |
T |
|
| Q |
395 |
gcttctgtaagtgtgattcaccaattaatgaattcataatttcataaactctattttcctcattcttctattcttcttattctctcaattccaataaaat |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561248 |
gcttctgtaagtgtgattcaccaattaatgaattcataatttcataaactctattttcctcattcttctattcttcttattctctcaattccaataaaat |
34561149 |
T |
|
| Q |
495 |
caaaaccctaaaaaccctaccttgtgtgtggaacaagcattgtaagctgcgctaacagaactgagttcatacactttcctctcctcaatccacatctttt |
594 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34561148 |
caaaaccctaaaaaccctacct----tgtggaacaagcattgtaagctgcgctaacagaactgagttcatacaattccctctcctcaatccacatctttt |
34561053 |
T |
|
| Q |
595 |
ttcttttc |
602 |
Q |
| |
|
|||||||| |
|
|
| T |
34561052 |
ttcttttc |
34561045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 729789 - 729844
Alignment:
| Q |
405 |
gtgtgattcaccaattaatgaattcataatttcataaactctattttcctcattct |
460 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
729789 |
gtgtgattcaccaatcaatgaattcacaatttcataaactctattcttctcattct |
729844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 551
Target Start/End: Original strand, 22581179 - 22581274
Alignment:
| Q |
452 |
cctcattcttctattcttcttattctctcaattccaataaaatcaaaacccta-aaaaccctaccttgtgtgtggaacaagcattgtaagctgcgctaac |
550 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||| |||| || |||||||||||||||||||| ||| ||||| |
|
|
| T |
22581179 |
cctcattct-ctattcttcttattctctcaattcaaattaaatcaaaaccctataaagtcctagct----tgtggaacaagcattgtaagttgcactaac |
22581273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 7678704 - 7678634
Alignment:
| Q |
454 |
tcattcttcta--ttcttcttattctctcaattccaataaaatcaaaaccct--aaaaaccctaccttgtg |
520 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7678704 |
tcattcttctacattcttcttattctctcaaattcaataaaatcaaaaccctagaaaaaccctagcttgtg |
7678634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 520
Target Start/End: Original strand, 729828 - 729887
Alignment:
| Q |
461 |
tctattcttcttattctctcaattccaataaaatcaaaacccta-aaaaccctaccttgtg |
520 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| || ||||||||| |||||| |
|
|
| T |
729828 |
tctattcttctcattctctcaaatccaataaaa-caaaaccttagaaaaccctagcttgtg |
729887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 271 - 513
Target Start/End: Original strand, 450557 - 450796
Alignment:
| Q |
271 |
tcaagttagtttttagttggttacaagtttgttacgnnnnnnnnnnacttgtttgtagcataagatagttagggataagtgattacttgttccttaagcc |
370 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
450557 |
tcaagttaatttttagttggttacaagtttcttacgtttttg-----cttgtttgtagcataaagtagttagggctaagtgattacttgttcgttaagct |
450651 |
T |
|
| Q |
371 |
acctaacatttagcatgtttataagcttctgtaagtgtgattcaccaattaatgaattcataatttcataaactctattttcctcattcttctattcttc |
470 |
Q |
| |
|
|||||||||||| ||||| |||||| || || ||||||||||||||||||| ||||| || |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
450652 |
acctaacatttaccatgtatataagtttttgcaagtgtgattcaccaattactgaatccacaatttcataaactctattctcttcattcttctattcttc |
450751 |
T |
|
| Q |
471 |
ttatt-ctctcaattccaataaaatcaaaacccta-aaaacccta |
513 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
450752 |
ttattcctctcaattccaattaaatcaaaaccctagaaaacccta |
450796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 322 - 436
Target Start/End: Original strand, 39106198 - 39106312
Alignment:
| Q |
322 |
tttgtagcataagatagttagggataagtgattacttgttccttaagccacctaacatttagcatgtttataagcttctgtaagtgtgattcaccaatta |
421 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||| | |
|
|
| T |
39106198 |
tttgtagcataaggtagttagggctaagtgattacttgttccttaagccacctaacatttaccatgtatataagcctatgtaagtgtgattcaccaatca |
39106297 |
T |
|
| Q |
422 |
atgaattcataattt |
436 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
39106298 |
atgaattcacaattt |
39106312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 3755579 - 3755539
Alignment:
| Q |
464 |
attcttcttattctctcaattccaataaaatcaaaacccta |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3755579 |
attcttcttattctctcaattccaattaaatcaaaacccta |
3755539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 39106157 - 39106185
Alignment:
| Q |
276 |
ttagtttttagttggttacaagtttgtta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39106157 |
ttagtttttagttggttacaagtttgtta |
39106185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 4664589 - 4664496
Alignment:
| Q |
406 |
tgtgattcaccaattaatgaattcataatttcat-aaactctattttcctcattcttctattcttcttattctctcaattccaataaaatcaaaa |
499 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||| ||| | ||| ||| ||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
4664589 |
tgtgattcaccaatcaatgaattcacaatttcataaaactcaattcttctccttc-tctattcttctcattctctcaaatccaataaaaacaaaa |
4664496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 33670740 - 33670779
Alignment:
| Q |
465 |
ttcttcttattctctcaattccaataaaatcaaaacccta |
504 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33670740 |
ttcttcttattcgctcaattccaataaaatcaaaacccta |
33670779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 3595509 - 3595563
Alignment:
| Q |
451 |
tcctcattcttctattcttcttattctctcaattccaataaaatcaaaaccctaa |
505 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
3595509 |
tcctcattcacctattctttctattctctcaaatccaataaaatcaaaaccctaa |
3595563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 3597867 - 3597900
Alignment:
| Q |
472 |
tattctctcaattccaataaaatcaaaaccctaa |
505 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
3597867 |
tattctctcaaatccaataaaatcaaaaccctaa |
3597900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University