View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13390_low_3 (Length: 551)
Name: NF13390_low_3
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 5129731 - 5129235
Alignment:
| Q |
18 |
atgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgcaaatgatgtcttttctttttattgtaaaatttaatctctgttcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
5129731 |
atgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgaaaatgatgtcttttcttttt-ttgtaaactttaatctctgttcat |
5129633 |
T |
|
| Q |
118 |
tagtcattatctatggttttcggagaatgacttgctaccttgttaccttcattaggaaaaacaagacagttctttatcattcagtttcctgatgtcttat |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| || | | || | ||||| ||||||||||||||||||||||||||| |
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| T |
5129632 |
tagtcattatctatggttttcagagaatgacttgctaccttgttgccg--agtgcttaatgct---cagtt--ttatcattcagtttcctgatgtcttat |
5129540 |
T |
|
| Q |
218 |
atatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagggtttctgaatcctgagtctgaaatataaccacttatttgaggag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5129539 |
atatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagcgtttttgaatcctgagtctgaaatataaccacttatttgaggag |
5129440 |
T |
|
| Q |
318 |
ctttgatcaaattgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtcagatgatattataagcatcgtgtaacaacatac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
5129439 |
ctttgatcaaattgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtaagatgatattataagcatcgtgtcacaacatac |
5129340 |
T |
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| Q |
418 |
aaaataaagaatttaaggaaagcatgcttgaaaacacgaacactacatttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgcaattat |
517 |
Q |
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| T |
5129339 |
aaaataaagaatttaaggaaagcatgcttgaaaacacaaacactacatttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgcaattat |
5129240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 1601534 - 1601575
Alignment:
| Q |
244 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
285 |
Q |
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| T |
1601534 |
ttcttagtctttaactgctccttgaaaagggtttctgaatcc |
1601575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 8527534 - 8527497
Alignment:
| Q |
248 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
285 |
Q |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
8527534 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8527497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 8534125 - 8534088
Alignment:
| Q |
248 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
285 |
Q |
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| T |
8534125 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8534088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 48363166 - 48363207
Alignment:
| Q |
244 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
285 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||| |
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| T |
48363166 |
ttcttaatctttaactgctccttgaaaagggtttctgaatcc |
48363207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 9441868 - 9441831
Alignment:
| Q |
248 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
285 |
Q |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
9441868 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
9441831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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