View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13390_low_4 (Length: 523)

Name: NF13390_low_4
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13390_low_4
NF13390_low_4
[»] chr6 (13 HSPs)
chr6 (17-523)||(13930258-13930764)
chr6 (66-232)||(14023576-14023742)
chr6 (84-233)||(13897826-13897975)
chr6 (86-245)||(13894814-13894962)
chr6 (330-389)||(13476292-13476351)
chr6 (376-433)||(14044513-14044570)
chr6 (315-356)||(14044622-14044663)
chr6 (151-238)||(13876896-13876983)
chr6 (488-523)||(14044438-14044473)
chr6 (86-125)||(13474741-13474780)
chr6 (185-219)||(13474780-13474814)
chr6 (205-233)||(13864286-13864314)
chr6 (183-219)||(14082851-14082887)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 13930764 - 13930258
Alignment:
Q  17 agtattcaacgagtaaaagttaccttttgtactctctttataatagttcttagttctcacagtattgcgggatattaactgtcgaaccaagttagcttgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930764 agtattcaacgagtaaaagttaccttttgtactctctttataatagttcttagttctcacagtattgcgggatattaactgtcgaaccaagttagcttgc 13930665  T
Q  117 tgttgaagttattgcttctgggattctggtggaggctgaattttgcttatataatcatgcatcagcaataatgaagaatttcaaaatgtgaaattgttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930664 tgttgaagttattgcttctgggattctggtggaggctgaattttgcttatataatcatgcatcagcaataatgaagaatttcaaaatgtgaaattgttta 13930565  T
Q  217 tgacttagaacttgtctgtgttagtgaatttgtcttaaatgcatagtagtcattgacagaaagtacttataattaaacagcatatacatgagagtaaaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930564 tgacttagaacttgtctgtgttagtgaatttgtcttaaatgcatagtagtcattgacagaaagtacttataattaaacagcatatacatgagagtaaaac 13930465  T
Q  317 ttaacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgtttgcaactttgcattttttcactctctgttagtggaagattaagag 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930464 ttaacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgtttgcaactttgcattttttcactctctgttagtggaagattaagag 13930365  T
Q  417 ctcattcattgcagattagtaaaagaaaatttcctcgaataaattacaacataatatgtgcttcctacttaaaaaccaaagagaattgctctacggtcca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930364 ctcattcattgcagattagtaaaagaaaatttcctcgaataaattacaatataatatgtgcttcctacttaaaaaccaaagagaattgctctacggtcca 13930265  T
Q  517 tcagttt 523  Q
    |||||||    
T  13930264 tcagttt 13930258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 14023742 - 14023576
Alignment:
Q  66 ttagttctcacagtattgcgggatattaactgtcgaaccaagttagcttgctgttgaagttattgcttctgggattctggtggaggctgaattttgctta 165  Q
    ||||||||||||| |  || ||||| |||||||| ||||||||||  | |||||||||||  ||||| ||||||||| |||||| ||| || ||    ||    
T  14023742 ttagttctcacagaagcgcaggatagtaactgtctaaccaagttaattggctgttgaagtagttgctgctgggattccggtggatgcttaaattcaaata 14023643  T
Q  166 tataatcatgcatcagcaataatgaagaatttcaaaatgtgaaattgtttatgacttagaacttgtc 232  Q
    |  | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14023642 ttcagtcatgcatcagcagtaatgaagaatttcaaaatgtgaaattgtttatgacttagaacttgtc 14023576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 13897826 - 13897975
Alignment:
Q  84 cgggatattaactgtcgaaccaagttagcttgctgttgaagttattgcttctgggattctggtggaggctgaattttgcttatataatcatgcatcagca 183  Q
    ||||||||||||||| |||||||||||||| ||  ||||||| |||||| ||||||||||||||   |||||| ||| | |||||| |||||||||||||    
T  13897826 cgggatattaactgttgaaccaagttagctggcaattgaagtaattgctgctgggattctggtgatagctgaaatttacatatatagtcatgcatcagca 13897925  T
Q  184 ataatgaagaatttcaaaatgtgaaattgtttatgacttagaacttgtct 233  Q
     |||| || ||| |||| ||||||||||| |||||| |||||||| ||||    
T  13897926 gtaataaataatgtcaagatgtgaaattgcttatgaattagaactcgtct 13897975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 13894814 - 13894962
Alignment:
Q  86 ggatattaactgtcgaaccaagttagcttgctgttgaagttattgcttctgggattctggtggaggctgaattttgcttatataatcatgcatcagcaat 185  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||           |||||| ||| | ||| || ||||||||||| | |    
T  13894814 ggatattaactgtcggaccaagttagcttgcagttgaagtaattgctgctggga-----------gctgaaatttacatatgtagtcatgcatcagaagt 13894902  T
Q  186 aatgaagaatttcaaaatgtgaaattgtttatgacttagaacttgtctgtgttagtgaat 245  Q
    ||||||  || | ||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  13894903 aatgaattatatgaaaatgtgaaattgtttatgacttataacttgtctatgttagagaat 13894962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 13476292 - 13476351
Alignment:
Q  330 taagaatctatcgttaatgtagaatttgttttgcactctgtttgcaactttgcatttttt 389  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  13476292 taagaatctatcgttaatgtagaattggtttcgcactctgtctgcaactttgcatttttt 13476351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 14044570 - 14044513
Alignment:
Q  376 actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt 433  Q
    ||||||||||||||||| |||||||||| |||||||| || |||||||||||||||||    
T  14044570 actttgcattttttcacactctgttagtagaagattaggaactcattcattgcagatt 14044513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 14044663 - 14044622
Alignment:
Q  315 acttaacacaacatgtaagaatctatcgttaatgtagaattt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14044663 acttaacacaacatgtaagaatctatcgttaatgtagaattt 14044622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 13876896 - 13876983
Alignment:
Q  151 gctgaattttgcttatataatcatgcatcagcaataatgaagaatttcaaaatgtgaaattgtttatgacttagaacttgtctgtgtt 238  Q
    |||||| ||| | |||||| ||||||||||| | | ||||||||| | ||||| ||||||||||||||||||||||||| ||| ||||    
T  13876896 gctgaaatttacatatatagtcatgcatcagaagtcatgaagaatatgaaaatctgaaattgtttatgacttagaacttatctatgtt 13876983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 523
Target Start/End: Complemental strand, 14044473 - 14044438
Alignment:
Q  488 aaaaccaaagagaattgctctacggtccatcagttt 523  Q
    ||||||||||||||||||||||||||||||||||||    
T  14044473 aaaaccaaagagaattgctctacggtccatcagttt 14044438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 13474741 - 13474780
Alignment:
Q  86 ggatattaactgtcgaaccaagttagcttgctgttgaagt 125  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  13474741 ggatattaattgtcgaaccaagttagcttgcagttgaagt 13474780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 13474780 - 13474814
Alignment:
Q  185 taatgaagaatttcaaaatgtgaaattgtttatga 219  Q
    ||||||||||| |||||||||||||||||||||||    
T  13474780 taatgaagaatatcaaaatgtgaaattgtttatga 13474814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 13864286 - 13864314
Alignment:
Q  205 tgaaattgtttatgacttagaacttgtct 233  Q
    |||||||||||||||||||||||||||||    
T  13864286 tgaaattgtttatgacttagaacttgtct 13864314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 14082887 - 14082851
Alignment:
Q  183 aataatgaagaatttcaaaatgtgaaattgtttatga 219  Q
    |||||| |||||| |||||||||||||||||||||||    
T  14082887 aataataaagaatatcaaaatgtgaaattgtttatga 14082851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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