View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13390_low_5 (Length: 461)
Name: NF13390_low_5
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_5 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 35 - 445
Target Start/End: Original strand, 41167141 - 41167551
Alignment:
| Q |
35 |
tcataggtattgagactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataaaggc |
134 |
Q |
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| T |
41167141 |
tcataggttttgagactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataatggc |
41167240 |
T |
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| Q |
135 |
cattatagggggaataaattaatagtattac----aaaaagaaaactatagtaaactaaacatttagtttttgatttaannnnnnnattctatgttagct |
230 |
Q |
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| T |
41167241 |
cattatagggggaataaattaatagtattattacaaaaaagaaaactatagtaaactaaacatttagtttttgatttaatttttttattctatgttagct |
41167340 |
T |
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| Q |
231 |
caaagtttgttagttgagctaaatattcaactcaatatggtattaatctgtgtgctagtacgtggtatgtcacatatatcatgtcttgtttatttttcta |
330 |
Q |
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| T |
41167341 |
caaagtttgttagttgagctaaatattcaactcaatatggtattaatctgtgtgctagt----ggtatgtcacatatatcatgtcttgtttatttttcta |
41167436 |
T |
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| Q |
331 |
gaaggtcaactactagcttgagtgaacttaagttttttgcatgcaatattggttacgcatgcttgtgctaacttcatcttaatgtatttgtttgtgaaat |
430 |
Q |
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| T |
41167437 |
gaaggccaactactagcttgagtgaacttaagttttttgcatgcaatattggttacgcatgcttgtgctaacttcatcttaatgtatttgtttgtgaaat |
41167536 |
T |
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| Q |
431 |
taagggtgcagtaac |
445 |
Q |
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| T |
41167537 |
taagggtgcagtaac |
41167551 |
T |
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Target: scaffold0449 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 682 - 621
Alignment:
| Q |
218 |
ttctatgttagctcaaagtttgttagttgagctaaatattcaactcaatatggtattaatct |
279 |
Q |
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| T |
682 |
ttctatgttagcttaaagtttgttagttgggataaatagtttgttcaatatggtattaatct |
621 |
T |
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