View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13390_low_6 (Length: 461)
Name: NF13390_low_6
Description: NF13390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13390_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 267 - 452
Target Start/End: Original strand, 11100042 - 11100227
Alignment:
| Q |
267 |
cagatgatttgagttatctttcttggttgattgaccataatttgatggatgttggtagacgtttggaagcatgggataacaatgaaatcgcggcaacagt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11100042 |
cagatgatttgagttatctttcttggttgattgaccataatttgatcgatgttggtagacgtttggaagcgtgggataacaatgaaatcgcggcaacagt |
11100141 |
T |
|
| Q |
367 |
accaacgccacctctagcagcatctaggagtgaagaaatggcaattatgggtgatggccatgttgggatacctattaatgatgatg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11100142 |
accaacgccacctctagcagcatctaggagtgaagaaatggcaattatgggtgatggccatgttgggatacctattaataatgatg |
11100227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 11095920 - 11096236
Alignment:
| Q |
18 |
cttatgagcctcatcctgagatttggccatcaccagagggggtccaaacagtgctctcaaaattcatggcaatgcatgagttccagaagtgcaataaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11095920 |
cttatgagcctcatcctgagatttggccatcaccagaaggtgtccaatctgtgctctcaaaattcatgacaatgcatgagttccagaagtgcaataaaaa |
11096019 |
T |
|
| Q |
118 |
gatggaccatgagagttttttgatacatagggttctgaaggctgaagagaatttgaagnnnnnnnnnnnnnnnnntagggagcaagagatgacaatattc |
217 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||| |||||||||||||||| |||| | ||||||||||||||||||| || || |
|
|
| T |
11096020 |
gatggaccatgagactttcatgacacatagggttttgaaggctgaagagaaattgatgaaacaaagaaaagataatagggagcaagagatgacattactc |
11096119 |
T |
|
| Q |
218 |
atgactcaatgtcttaatgaaggtaaagttccggcagacaatatgtcgacagatgatttgagttatctttcttggttgattgaccataatttgatggatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| || | ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
11096120 |
atgactcaatgtcttaatgaaggtaaagttgtgcacgacaatttgccaacagatgatttgagtgatctttcttggttgattgaccataatttgaaggaca |
11096219 |
T |
|
| Q |
318 |
ttggtagacgtttggaa |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11096220 |
ttggtagacgtttggaa |
11096236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 11106615 - 11106948
Alignment:
| Q |
18 |
cttatgagcctcatcctgagatttggccatcaccagagggggtccaaacagtgctctcaaaattcatggcaatgcatgagttccagaagtgcaataaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| | |||| ||||| || |||||||| ||||| |
|
|
| T |
11106615 |
cttatgagcctcatcctgagatttggccatcaccagaaggggtccaatctgtgctctcaaaattcatggaactgcacgagtttcaaaagtgcaagaaaat |
11106714 |
T |
|
| Q |
118 |
gatggaccatgagagttttttgatacatagggttctgaaggctgaagagaatttgaagnnnnnnnnnnnnnnnnntagggagcaagagatgacaatattc |
217 |
Q |
| |
|
|||| |||| |||| ||| ||| ||| ||||||||||||||||||||||| |||| | |||||||||||||||||| || || |
|
|
| T |
11106715 |
gatgaaccaagagactttcttggcacaaagggttctgaaggctgaagagaaattgatgaaacaaagaaaagataacagggagcaagagatgacattactc |
11106814 |
T |
|
| Q |
218 |
atgactcaatgtcttaatgaaggtaaagttccggcagacaatatgtcgacagatgatttgagttatctttcttggttgattgaccataatttgatggatg |
317 |
Q |
| |
|
|||||||||||||||| |||||||| |||| | |||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
11106815 |
atgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaacaatggatatgagttatcttgcttggttgattgaccacaatttgaaggatg |
11106914 |
T |
|
| Q |
318 |
ttggtagacgtttggaagcatgggataacaatga |
351 |
Q |
| |
|
||| |||||||||||||||||| |||| |||||| |
|
|
| T |
11106915 |
ttgctagacgtttggaagcatgtgatatcaatga |
11106948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 10986905 - 10987238
Alignment:
| Q |
18 |
cttatgagcctcatcctgagatttggccatcaccagagggggtccaaacagtgctctcaaaattcatggcaatgcatgagttccagaagtgcaataaaat |
117 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||| |||||||| |||||||| ||||| |
|
|
| T |
10986905 |
cttatgagcttcaacctgagatttggccatcaccagaaggggtccaatctgtgctctcaaaattcatggcactgcacgagttccaaaagtgcaagaaaat |
10987004 |
T |
|
| Q |
118 |
gatggaccatgagagttttttgatacatagggttctgaaggctgaagagaatttgaagnnnnnnnnnnnnnnnnntagggagcaagagatgacaatattc |
217 |
Q |
| |
|
|||| |||| || | ||| |||| ||| || ||| |||||||||||||||| | ||| |||||| ||||||||||||||| || |
|
|
| T |
10987005 |
gatgaaccaagaaactttcttgacacaaagtgttttgaaggctgaagagaaactaaagaaacaaagaaaagaaaatagggaacaagagatgacaataatc |
10987104 |
T |
|
| Q |
218 |
atgactcaatgtcttaatgaaggtaaagttccggcagacaatatgtcgacagatgatttgagttatctttcttggttgattgaccataatttgatggatg |
317 |
Q |
| |
|
||| |||||||||| |||||||||| |||| | ||||||||||| ||| ||| ||||||||||| ||||||||||||||||||| |||| ||| | |
|
|
| T |
10987105 |
atgtctcaatgtctcaatgaaggtagagttgtgcacgacaatatgtcaacaatggatatgagttatcttgcttggttgattgaccataaattgaaggacg |
10987204 |
T |
|
| Q |
318 |
ttggtagacgtttggaagcatgggataacaatga |
351 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
10987205 |
ttgctagacgtttggaagcatgggataacaatga |
10987238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 11106989 - 11107068
Alignment:
| Q |
350 |
gaaatcgcggcaacagtaccaacgccacctctagcagcatctaggagtgaagaaatggcaattatgggtgatggccatgt |
429 |
Q |
| |
|
||||| ||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11106989 |
gaaatggcggcaacagtgccaccaccacctctagcaccatctaggagtgaagaaatggcaattatgggtcatggccatgt |
11107068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 9895203 - 9895054
Alignment:
| Q |
20 |
tatgagcctcatcctgagatttggccatcaccagagggggtccaaacagtgctctcaaaa-ttcatggcaatgcatgagttccagaagtgcaataaaatg |
118 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |||| ||||||||||||||||||||| |||| ||||| ||||| ||||| || | |||||| |
|
|
| T |
9895203 |
tatgagcctcaaccgaagatctggccatcaccacagggagtccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatg |
9895104 |
T |
|
| Q |
119 |
atggaccatgagagttttttgatacatagggttctgaaggctgaagagaa |
168 |
Q |
| |
|
||| |||| |||| || | ||||||| |||||||||||||| ||||||| |
|
|
| T |
9895103 |
atgaaccaagagacttatatgatacaaagggttctgaaggccaaagagaa |
9895054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 11248261 - 11248201
Alignment:
| Q |
23 |
gagcctcatcctgagatttggccatcaccagagggggtccaaacagtgctctcaaaattca |
83 |
Q |
| |
|
|||||||| ||| |||| ||||||||| || | || || |||||||||||||||||||||| |
|
|
| T |
11248261 |
gagcctcaacctaagatatggccatcatcacaaggagttcaaacagtgctctcaaaattca |
11248201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University