View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_high_4 (Length: 301)
Name: NF13391_high_4
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 718336 - 718629
Alignment:
| Q |
1 |
caaaggcaaaggcacatgatgctaaggccaagaaggctgtcacaaacaagtaagtagtcttcatgnnnnnnnnnnagaaattttattcgtgtaatttgct |
100 |
Q |
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| T |
718336 |
caaaggcaaaggcacatgatgctaaggccaagaaggctgtcacaaacaagtaagtagtcttcatgttttttttt-agaaattttattcgtgtaatttgct |
718434 |
T |
|
| Q |
101 |
tgtatatgtttatgtaagggtgatatatttcacaatgcaaacataatgtctatttataagcaagtgacattgaacaagtccatagttaatttagttgcac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718435 |
tgtatatgtttatgtaaggatgatatatttcacaatgcaaacataatgtctatttataagcaagtgacattgaacaagtccatagttaatttagttgcac |
718534 |
T |
|
| Q |
201 |
aagcgtgtaaagacctagtaaattttaattaatcaaagcatacattttttattagtagttggacattattcttttcaagaacaaattgaatattc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718535 |
tagcgtgtaaagacctagtaaattttaattaatcaaagcatacattttttattagtagttggacattattcttttcaagaacaaattgaatattc |
718629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 703043 - 703092
Alignment:
| Q |
1 |
caaaggcaaaggcacatgatgctaaggccaagaaggctgtcacaaacaag |
50 |
Q |
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| T |
703043 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaag |
703092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 712395 - 712346
Alignment:
| Q |
1 |
caaaggcaaaggcacatgatgctaaggccaagaaggctgtcacaaacaag |
50 |
Q |
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|||||||||||||||| |||||||| || ||||||||||||||||||||| |
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| T |
712395 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaag |
712346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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