View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_low_1 (Length: 1306)
Name: NF13391_low_1
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 1162; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1162; E-Value: 0
Query Start/End: Original strand, 21 - 1299
Target Start/End: Complemental strand, 5041571 - 5040294
Alignment:
| Q |
21 |
atccagctggagagaagaacctttaatacctcaatcatttcagtccctttcagacagtagaccttacaacattatgccagatttcaacatggcccaccaa |
120 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5041571 |
atccagctggagaaaagaacctttaatacctcaatcatttcagtccctttcagacagtagaccttacaacattatgccagatttcaacatggcccaccaa |
5041472 |
T |
|
| Q |
121 |
caacaaaaactcagcaactcttttgagtcttttgattgtttgctttcaggtactaacagtaacacagacaattctgtcgaaaatgataatgatggaattt |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5041471 |
caacaaaaactcaacaactcttttgagtcttttgattgtttgctttcaggtactaacagtaacacagacacttctgtcgaaaatgataatgatggaattt |
5041372 |
T |
|
| Q |
221 |
caaagctattttctgactgcaaaaacttatggaacttcagttatgtcagtaacacagcaacttcctcaggtgaaactgatagtaatgtttcaaacagtac |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5041371 |
caaagctattttctgactgcaaaaacttatggaacttcagttatgtcagtaacacagcaacctcctcaggtgaaactgatagtaatgtttcaaacagtac |
5041272 |
T |
|
| Q |
321 |
aagctacgaagcactgacacaaacacggacgcaaacaccagacacgccttcgatcagaagtgtcagtgctacagagggtactggaaacaaaaacattcag |
420 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041271 |
aagctacgaagcactgacacaaacacagatgcgaacaccagacacgtcttcgatcaaaagtgtcagtgctacagagggtactggaaacaaaaacattcag |
5041172 |
T |
|
| Q |
421 |
tgtccactcaatgaatttgatgaaacaatctctcaaagttcctcagatcaatacatccatccaagaaaagcaatacaatcaagtactattcataattctt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041171 |
tgtccactcaatgaatttgatgaaacaatctctcaaagttcctcagatcaatacatccatccaagaaaagcaatacaatcaagtactattcataattctt |
5041072 |
T |
|
| Q |
521 |
cacctgttgaaggtggttttagacttatcactgataaaccaccaaaatgcaagaaaccaagatgtgataagggaccttgttcaactaatattaattttca |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041071 |
cacctgttgaaggtggttttagacttatcactgataaaccaccaaaatgcaagaaaccaagatgtgataagggaccttgttcaactaatattaattttca |
5040972 |
T |
|
| Q |
621 |
acaaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagca |
720 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5040971 |
acaaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagca |
5040872 |
T |
|
| Q |
721 |
tttagaccagtgaattttggaatggatgatattgatgtaattgnnnnnnngcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctg |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5040871 |
tttagaccagtgaattttggaatggatgatattgatgtaattgaaaaaaagccgaagaggaagaatgtaaagatatcaaatgatcctcaaactgttgctg |
5040772 |
T |
|
| Q |
821 |
caagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
920 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5040771 |
caaggcatagaagagaaagaataagtgaaagaattagggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
5040672 |
T |
|
| Q |
921 |
tgcaaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagttaatgctatggattgtaatccaactagtattgctttc |
1020 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5040671 |
tgcaaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagttaatgctatggattgtaatccaactagtattgctttc |
5040572 |
T |
|
| Q |
1021 |
tcttttaacccttcttttcccatgcaaatgatccctagtaatcacaatcctcattcacagggttgacatgattattatcatgaattcatgatgatctcta |
1120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5040571 |
tcttttaacccttcttttcccatgcaaatgatccctagtaatcacaatcctcattcacagggttgacatgaatattatcatgaattcatgatgatctcta |
5040472 |
T |
|
| Q |
1121 |
atcatttcattgttatcaaagacaatgattaatgtatctgatctttattaattttctagccaaagttgcaggaaatatctaattgttaatgttttgatta |
1220 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5040471 |
atcatttcattattatcaaagacaatgattaatgtatctgatctttattaattttctagccaaagttgcaggaaatatctaattgttaatg-tttgatta |
5040373 |
T |
|
| Q |
1221 |
tcatannnnnnnngtaactttcttcggttaataattatcagtgacttgacttgtttaaaattttccttaatgatgatgt |
1299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5040372 |
tcatattttttttgtaactttcttcggttaataattatcagtgacttgacttgtttaaaattttccttaatgatgatgt |
5040294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 14229606 - 14229647
Alignment:
| Q |
355 |
acaccagacacgccttcgatcagaagtgtcagtgctacagag |
396 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| |||| |
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|
| T |
14229606 |
acaccggacatgccttcgatcagaagtgtcagtgctatagag |
14229647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 659 - 939
Target Start/End: Complemental strand, 43187247 - 43186976
Alignment:
| Q |
659 |
ttgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagcatttagaccagtga---attttggaatggatgatattga |
755 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||| || |||| | ||| |
|
|
| T |
43187247 |
ttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagagctgcagcatttaggccggtgacgaatttgggtttggaag----tga |
43187152 |
T |
|
| Q |
756 |
tgtaattgnnnnnnngcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaatt |
855 |
Q |
| |
|
|| || |||||| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||||||||||||| ||||||| ||| |
|
|
| T |
43187151 |
tggaa--------aagcctaaaaggaagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggatt |
43187060 |
T |
|
| Q |
856 |
agggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagttt |
939 |
Q |
| |
|
|| || ||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
43187059 |
agagtcttgcagaagattgttcctggtggaaccaagatggacactgcatcaatgcttgatgaagctgctaattacctcaagttt |
43186976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 775 - 920
Target Start/End: Original strand, 6259553 - 6259698
Alignment:
| Q |
775 |
aagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagatt- |
873 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||| ||| || |||||||||||||| |||||||| |||||||||| ||| | || | ||||||| |
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|
| T |
6259553 |
aagagaaagaatgtgaagatttcaaaggatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattac-aaagatta |
6259651 |
T |
|
| Q |
874 |
gtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
920 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| | |||||||| |
|
|
| T |
6259652 |
gtacctggtggaacaaaaatggacactgcttctatgttagatgaagc |
6259698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 28136281 - 28136322
Alignment:
| Q |
355 |
acaccagacacgccttcgatcagaagtgtcagtgctacagag |
396 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28136281 |
acaccagacacgtcttcgatcagaagtgtcagtgctatagag |
28136322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 13635640 - 13635682
Alignment:
| Q |
355 |
acaccagacacgccttcgatcagaagtgtcagtgctacagagg |
397 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
13635640 |
acaccagacacgccttctatcagaagtgtcagtgctactgagg |
13635682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 14782837 - 14782796
Alignment:
| Q |
355 |
acaccagacacgccttcgatcagaagtgtcagtgctacagag |
396 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
14782837 |
acaccagacacgctttccatcagaagtgtcggtgctacagag |
14782796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 4785045 - 4785083
Alignment:
| Q |
355 |
acaccagacacgccttcgatcagaagtgtcagtgctaca |
393 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |
|
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| T |
4785045 |
acaccagacacgtcttcgatcagaagtgtcggtgctaca |
4785083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 18263563 - 18263604
Alignment:
| Q |
356 |
caccagacacgccttcgatcagaagtgtcagtgctacagagg |
397 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||||||| |
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|
| T |
18263563 |
cacctgacacgtcttcgatcagaagtgtcggtgctacagagg |
18263604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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