View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13391_low_10 (Length: 269)
Name: NF13391_low_10
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40894309 - 40894069
Alignment:
| Q |
1 |
agaggtgaagtaaaagatggtgagaaaagttggttctctcaaaagaagccaatcatcgcatgagtgcagttcatctctatcaactacattcttaccaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894309 |
agaggtgaagtaaaagatggtgagaaaagttggttctctcaaaagaagccaatcatcgcatgagtgcagttcatctctatcaactacattcttaccaatg |
40894210 |
T |
|
| Q |
101 |
tgtcattatccactattatcagtgttctcactactctcaccatccacattatcctcttaattgtgatcagggattgactagtctgcaatatgtctccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40894209 |
tgtcattatccactattatcagtgttctcactactctcaccatccacattatcctcttaattgtgatcagcgattgactagtctgcaatatgtctccatt |
40894110 |
T |
|
| Q |
201 |
cttgcaacaccaatgatttatcttgacaaattcattgcaac |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894109 |
cttgcaacaccaatgatttatcttgacaaattcattgcaac |
40894069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 44155577 - 44155671
Alignment:
| Q |
63 |
agtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatccacattatcctct |
157 |
Q |
| |
|
||||||||| ||||||||| | |||||||| || |||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155577 |
agtgcagtttatctctatcgagtacattctcacaaatgtgtcattagccaccatcatcagtgttctcactactctcaccatccacattatcctct |
44155671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 44146241 - 44146202
Alignment:
| Q |
211 |
caatgatttatcttgacaaattcattgcaacgtgccctat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44146241 |
caatgatttatcttgacaaattcattgcaacgtgccctat |
44146202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 44155830 - 44155869
Alignment:
| Q |
211 |
caatgatttatcttgacaaattcattgcaacgtgccctat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44155830 |
caatgatttatcttgacaaattcattgcaacgtgtcctat |
44155869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University