View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_low_2 (Length: 960)
Name: NF13391_low_2
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 5039524 - 5039252
Alignment:
| Q |
20 |
ctttagttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagtgg-tcctgtctccttaattcaacccaaagcgtgctcttaaaa |
118 |
Q |
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| T |
5039524 |
ctttagttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagtgggtcctgtctccttaattcaacccaaagcgtgctcttaaaa |
5039425 |
T |
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| Q |
119 |
atcactccaaaacgcattgttaggaacgtgcttgtttattcttcnnnnnnnggcaggagtataatatcccattgtgtctcaaataatgtaactaatgata |
218 |
Q |
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| T |
5039424 |
atcactccaaaacgcattgttaggaacgtgcttgcgtattcttctttttttggcaggagtataatatcccattgtgtctcaaataatgtaactaatgata |
5039325 |
T |
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| Q |
219 |
ttcttaatgatgatggatatgataacgacggctagaacaaaacgtgattaatttaatttaaggtcgtgttaac |
291 |
Q |
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| T |
5039324 |
ttcttaatgatgatggatatgataacgacggctagaacaaaacgtgattaatttaatttaaggtcgtgttaac |
5039252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 425 - 657
Target Start/End: Complemental strand, 5038982 - 5038749
Alignment:
| Q |
425 |
tatttgttaacatttgtcataatttatccta-atgtaactacctcaaatgtcttcttgttactttatctgcatgcgatatttttgttgctcaaaatgaag |
523 |
Q |
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| T |
5038982 |
tatttgttaacatttgtcctaatttatcctacatgtaactacctcaaatgtcttcttgttactttatctgcatgcgatatttttgttgctcaaaatgaag |
5038883 |
T |
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| Q |
524 |
tcactcacaaatttattccctctactcattaagataattatttgctaataacatttactcttgctatgataaattaaggataaaaactaacttaaaatac |
623 |
Q |
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| T |
5038882 |
tcactcacaaatttattccctctactcattaagataattatttgctaataacatttactcttgctataataaattaaggataaaaactaacttaaaatac |
5038783 |
T |
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| Q |
624 |
aacctcaatgcaggattgtcactttagattcacg |
657 |
Q |
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| T |
5038782 |
aacctcaatgcacgattgtcactttagattcacg |
5038749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 783 - 934
Target Start/End: Complemental strand, 5038534 - 5038383
Alignment:
| Q |
783 |
gagtaaggtataaagtgttttcgtggttatggtggcaattgtccattccattgaattttgttccatctatgttaagttttcatgtcttttggaaatgatg |
882 |
Q |
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| T |
5038534 |
gagtaaggtataaagtgttttcgtggttatggtggcaattgtccattccattgaattttgttccatctatattaagttttcatgtcttttggaaatgatg |
5038435 |
T |
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| Q |
883 |
atgtcttctatgacgacaagattctatgtgttgaacaattcgtgaattgaat |
934 |
Q |
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| T |
5038434 |
atgtcttctatgacgacaagattctaagtgttgaacaattcgtgaatagaat |
5038383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 5039162 - 5039116
Alignment:
| Q |
380 |
aagacgaatactttatattagattccttaacatatgtcttaaagata |
426 |
Q |
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| T |
5039162 |
aagacgaatactttatattggatcccttaacatatgtcttaaagata |
5039116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 43186167 - 43186078
Alignment:
| Q |
25 |
gttagctaaccaatgcaaaagacattctcttaagattagtgagcagagtcagtggtcctgtctccttaattcaacccaaagcgtgctcttaaaaatc |
121 |
Q |
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| T |
43186167 |
gttagctaaacaatgcaaaatacattctcttatgactagtg-------tcagtggtcctgtctccttgattcaacccaaagcgtgctcttgaaaatc |
43186078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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