View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_low_4 (Length: 752)
Name: NF13391_low_4
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 13 - 733
Target Start/End: Original strand, 38196067 - 38196788
Alignment:
| Q |
13 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgggtgctagctgaacagaaaaccgaacttccttcatatctcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38196067 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttccttcatatctcc |
38196166 |
T |
|
| Q |
113 |
ttcccacaccttatcattcctccgacgccataaacaccacaacatcatggcgatatcagtacatagttgtgacggtaatctgcataataaactnnnnnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38196167 |
ttcccacaccttatcattcctccgacgccataaacaccacaacatcatggcgatatcagtacatagttgtgttggtaatctgcataataaactaaaaaaa |
38196266 |
T |
|
| Q |
213 |
cattaagcaaaattcgaaactgtagcagcagcttcagaaatagtttcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaaga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38196267 |
cattaagcaaaattcgaaactgtagcagcagcttcagaaatagtttcccataacccagcaacttgccaaacttgctttgccgcttcacaaccaataaaga |
38196366 |
T |
|
| Q |
313 |
cgtgccaatcattctcgtaattgttctca-aatgtggactgcaatctgtgcactccaaagaaacacttttacccgttgcggaaatctaagcttccacatt |
411 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38196367 |
cgtgcctatcattctcgtaattgttctcacaatgtggacagcaatctgtgcactccaaagaaacacttttacccgctgcggaaatctaagcttccacatt |
38196466 |
T |
|
| Q |
412 |
ttctcccactcccctggtactcggtactcttcattatcaattagagtctctatagcatatcgatatgctgatttcacagtataattacctctattattaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196467 |
ttctcccactcccctggtactcggtactcttcattatcaattagagtctccatagcatatcgatatgctgatttcacagtataattacctctattattaa |
38196566 |
T |
|
| Q |
512 |
atttccaaataagcttgtcttcctctgtagccattgtgattgtgagcttgcaaatctcccctttgtctctttcattgaacataccatctatcaatcccca |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196567 |
atttccaaataagcttgtcttcctctgtagccattgtgattgtgagcttgcaaatctcccctttgtctctttcattgaacataccatctatcaatcccca |
38196666 |
T |
|
| Q |
612 |
attccatccttgcctgttctgttccatcaaatcagccactctaaagtgttctgttccagctacatgactgctagagatgaatgaattatcttttgcccgc |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38196667 |
attccatccttgcctgttctgttccatcaaatcagccactctaaagtgttctgttccagctacacgactgctagagatgaatgaattatcttttgcccgc |
38196766 |
T |
|
| Q |
712 |
aaccaaggatcatcccaaatcg |
733 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38196767 |
aaccaaggatcatcccaaatcg |
38196788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 29122892 - 29122805
Alignment:
| Q |
13 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgggtgctagctgaacagaaaaccgaacttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29122892 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc |
29122805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 25500365 - 25500289
Alignment:
| Q |
258 |
tcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaatt |
334 |
Q |
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||||||| |||||| |||||||| ||||| ||||| || ||| | |||||||| |||||||||||||| || ||||| |
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| T |
25500365 |
tcccatagcccagctacttgccacacttgttttgcagcctcacagccaataaacacgtgccaatcattttcataatt |
25500289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 6508581 - 6508654
Alignment:
| Q |
96 |
acttccttcatatctccttcccacaccttatcattcctccgacgccataaacaccacaacatcatggcgatatc |
169 |
Q |
| |
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||||| |||||||| |||||| |||| |||| |||||| | ||||||||||||||| |||||||| |||||||| |
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| T |
6508581 |
acttctttcatatcaccttcctacactttattattccttctacgccataaacaccataacatcatcgcgatatc |
6508654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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