View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_low_5 (Length: 645)
Name: NF13391_low_5
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 9 - 630
Target Start/End: Complemental strand, 25997532 - 25996911
Alignment:
| Q |
9 |
tgagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaac |
108 |
Q |
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| T |
25997532 |
tgagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagatctgtttgagctggttgaagaatattttgaaaac |
25997433 |
T |
|
| Q |
109 |
agtttgcagacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgagg |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997432 |
agtttgcaaacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgagg |
25997333 |
T |
|
| Q |
209 |
aagaatctgaatcaggagacaaatgctatgcaagaacattgcaagaattgaagaattttaaaacagctggtgatcctttcactgaggaatttttccaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997332 |
aagaatctgaatcaggagacaaatgctatgcaagaacattgcaagaattgaagaattttaaaacagctggtgatcctttcactgaggaatttttccaaat |
25997233 |
T |
|
| Q |
309 |
ttttcaatctgtttataagcaacagacttcaatgcttgaaaagcttcaaatcagaaagaacaagcttgataagaagctgaaaggaattcattcatggagg |
408 |
Q |
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| T |
25997232 |
ttttcaatctgtttataagcaacagacttcaatgcttgaaaagcttcaaatcagaaagaacaagcttgataagaagctgaaaggaattcattcatggagg |
25997133 |
T |
|
| Q |
409 |
aaagtttcaagtatgatatttgtagcaacatttgcagctgttttaatatgttctgttgtggctgcagctattgcagctccacctgttgctgcggctttag |
508 |
Q |
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| T |
25997132 |
aaagtttcaagtatgatatttgtagcaacatttgcagctgttttaatatgttctgttgtggctgcagctattgcagctccacctgttgctgcggctttag |
25997033 |
T |
|
| Q |
509 |
cagccgctacatcgatccctatcggttcgatgggaaaatggattgattcactttggagaaactatgaaattgcattgaaaggacagaaagaagttattgg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25997032 |
cagccgctacatcgatccctatcggttcgatgggaaaatggattgattcactttggagaaactatgaaattgcattgaaaggacagaaagaagttattgg |
25996933 |
T |
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| Q |
609 |
ctcaatgcaagctggtacttat |
630 |
Q |
| |
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| T |
25996932 |
ctcaatgcaagctggtacttat |
25996911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 12558478 - 12558162
Alignment:
| Q |
10 |
gagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaaca |
109 |
Q |
| |
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||||||||||| ||||||||||| |||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||| || | |
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| T |
12558478 |
gagatgaatcaggaagttgtgaaggtaatcttagactgtaagaaagatatatggaagagtcaagaactgtttgagcttgttgaggagtactttgataata |
12558379 |
T |
|
| Q |
110 |
gtttgcagacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgagga |
209 |
Q |
| |
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| ||| |||| | |||||||||| ||| || |||||||| |||| ||||| |||||||| |||||||||||| ||| || ||||| ||| || || |
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| T |
12558378 |
gcttgaagactctagatttctgcaatgctttagagaagtgtctgaagagagccagggatagtcaattgcttattgatgtagctcttcaaaagtttgatga |
12558279 |
T |
|
| Q |
210 |
agaatctgaatcaggagacaaatgctatgcaagaacattgcaagaattgaagaattttaaaacagctggtgatcctttcactgaggaatttttccaaatt |
309 |
Q |
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||| ||| || |||||||| ||||| | | || || || || |||||| |||||| | | ||||||||||||||||| ||||| |||||||| |
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| T |
12558278 |
ggaaactgtgtcgggagacaattgctacgtgaagacgttacaggagctgaagagttttaaggctgtcggtgatcctttcactgaagaattcttccaaata |
12558179 |
T |
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| Q |
310 |
tttcaatctgtttataa |
326 |
Q |
| |
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| ||||||||||||||| |
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| T |
12558178 |
tatcaatctgtttataa |
12558162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 590
Target Start/End: Complemental strand, 12558064 - 12557898
Alignment:
| Q |
424 |
atatttgtagcaacatttgcagctgttttaatatgttctgttgtggctgcagctattgcagctccacctgttgctgcggctttagcagccgctacatcga |
523 |
Q |
| |
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||||||||||| ||| |||| ||||||| || || || ||||| || |||||| |||| |||||| |||||| || ||| |||| || | ||| | | |
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| T |
12558064 |
atatttgtagccacagttgcttctgttttgatctgctcagttgtagcagcagctgttgcttctccacatgttgcagctgctgtagctgctgttactgcta |
12557965 |
T |
|
| Q |
524 |
tccctatcggttcgatgggaaaatggattgattcactttggagaaactatgaaattgcattgaaagg |
590 |
Q |
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|||| || ||||| |||||||| ||||| || |||||| || |||||||||| |||||||||||| |
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| T |
12557964 |
tcccaattggttcaatgggaaagtggatcgactcacttatgaagaactatgaaaatgcattgaaagg |
12557898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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