View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13391_low_6 (Length: 440)
Name: NF13391_low_6
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13391_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 38816584 - 38816155
Alignment:
| Q |
1 |
tatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatct |
100 |
Q |
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| T |
38816584 |
tatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatct |
38816485 |
T |
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| Q |
101 |
tgctgtg-aacattcaatttgcccttctaaagatgaaggaggaatgctttggggggtgagaaagggaccaatggtatgctgttgtttaggtttaattaaa |
199 |
Q |
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| T |
38816484 |
tgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaa |
38816385 |
T |
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| Q |
200 |
ccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgac |
299 |
Q |
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| T |
38816384 |
ccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgac |
38816285 |
T |
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| Q |
300 |
tttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctt |
399 |
Q |
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| T |
38816284 |
tttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctt |
38816185 |
T |
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| Q |
400 |
tcactgagttatgataattgtgcatgtgat |
429 |
Q |
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| T |
38816184 |
tcactgagttatgataattgtgcatgtgat |
38816155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
68 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtgaac-attcaatttgcccttctaaagatgaaggaggaatgctttggggggtgagaaaggga |
166 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
167 |
ccaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
216 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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