View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13391_low_7 (Length: 423)

Name: NF13391_low_7
Description: NF13391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13391_low_7
NF13391_low_7
[»] chr4 (22 HSPs)
chr4 (19-355)||(51853620-51853950)
chr4 (137-295)||(38766071-38766230)
chr4 (153-298)||(14854584-14854730)
chr4 (137-299)||(31307066-31307229)
chr4 (153-299)||(13686579-13686727)
chr4 (138-299)||(35972321-35972483)
chr4 (139-299)||(45994500-45994661)
chr4 (153-243)||(13948608-13948698)
chr4 (137-301)||(35334098-35334264)
chr4 (153-296)||(7096077-7096221)
chr4 (131-245)||(46016182-46016296)
chr4 (137-247)||(51626306-51626416)
chr4 (137-245)||(9012303-9012411)
chr4 (195-298)||(11140436-11140540)
chr4 (189-241)||(17135133-17135185)
chr4 (192-295)||(22189443-22189547)
chr4 (154-264)||(14042843-14042953)
chr4 (250-299)||(25768765-25768815)
chr4 (189-257)||(4710010-4710079)
chr4 (178-298)||(38844209-38844330)
chr4 (181-241)||(29597510-29597570)
chr4 (178-242)||(47023438-47023502)
[»] chr7 (20 HSPs)
chr7 (153-298)||(8839297-8839443)
chr7 (153-299)||(13254117-13254264)
chr7 (137-298)||(29059784-29059946)
chr7 (137-300)||(19477250-19477413)
chr7 (192-299)||(28537368-28537476)
chr7 (137-300)||(20207475-20207638)
chr7 (137-283)||(31492097-31492244)
chr7 (153-298)||(46373652-46373798)
chr7 (153-298)||(21747056-21747201)
chr7 (192-296)||(2657891-2657996)
chr7 (191-294)||(24579506-24579610)
chr7 (189-299)||(7265365-7265476)
chr7 (178-299)||(40099313-40099435)
chr7 (153-264)||(28828781-28828892)
chr7 (193-296)||(7190415-7190519)
chr7 (184-246)||(4059740-4059802)
chr7 (146-264)||(27484058-27484176)
chr7 (234-299)||(32469908-32469974)
chr7 (189-294)||(40211936-40212042)
chr7 (189-241)||(31717917-31717969)
[»] chr5 (11 HSPs)
chr5 (137-286)||(31113325-31113475)
chr5 (153-298)||(10591906-10592052)
chr5 (137-299)||(30784986-30785149)
chr5 (178-298)||(2798356-2798476)
chr5 (153-295)||(18909317-18909457)
chr5 (178-298)||(2804523-2804643)
chr5 (137-237)||(5123498-5123598)
chr5 (220-299)||(28023526-28023606)
chr5 (154-211)||(36212963-36213020)
chr5 (153-212)||(29553605-29553664)
chr5 (193-282)||(12682630-12682720)
[»] chr3 (11 HSPs)
chr3 (137-298)||(48204311-48204473)
chr3 (139-298)||(25224678-25224838)
chr3 (137-298)||(30995965-30996127)
chr3 (137-298)||(27763702-27763862)
chr3 (193-300)||(38088612-38088720)
chr3 (139-264)||(48210962-48211087)
chr3 (178-302)||(14352529-14352658)
chr3 (189-300)||(21465860-21465972)
chr3 (137-211)||(1642673-1642747)
chr3 (193-296)||(22288216-22288320)
chr3 (153-241)||(55123134-55123222)
[»] chr8 (15 HSPs)
chr8 (137-299)||(2743911-2744074)
chr8 (137-298)||(4125024-4125186)
chr8 (137-300)||(30935981-30936145)
chr8 (117-292)||(19715704-19715882)
chr8 (151-264)||(15682943-15683056)
chr8 (137-286)||(13468745-13468895)
chr8 (153-300)||(12958101-12958249)
chr8 (153-299)||(36994516-36994663)
chr8 (199-287)||(35206990-35207079)
chr8 (153-264)||(30056017-30056128)
chr8 (186-243)||(8878144-8878201)
chr8 (137-224)||(7839253-7839340)
chr8 (178-241)||(28377695-28377758)
chr8 (178-265)||(40900768-40900854)
chr8 (192-296)||(4321559-4321664)
[»] chr1 (28 HSPs)
chr1 (137-298)||(16756061-16756223)
chr1 (139-296)||(10840998-10841157)
chr1 (153-264)||(25655280-25655391)
chr1 (178-242)||(24801417-24801481)
chr1 (193-299)||(22022098-22022205)
chr1 (116-212)||(42297420-42297517)
chr1 (189-264)||(32883622-32883697)
chr1 (178-299)||(28724651-28724772)
chr1 (140-241)||(9780992-9781093)
chr1 (200-299)||(17600561-17600661)
chr1 (180-244)||(31733734-31733798)
chr1 (189-288)||(40019230-40019330)
chr1 (189-299)||(36982333-36982444)
chr1 (192-298)||(45806215-45806322)
chr1 (151-261)||(35539994-35540104)
chr1 (137-242)||(7242807-7242912)
chr1 (153-265)||(46864104-46864216)
chr1 (189-295)||(35692467-35692574)
chr1 (178-241)||(36522277-36522340)
chr1 (153-242)||(12035585-12035675)
chr1 (162-299)||(32534061-32534198)
chr1 (153-261)||(18428158-18428265)
chr1 (217-300)||(7624852-7624935)
chr1 (153-240)||(36806649-36806736)
chr1 (137-207)||(15642526-15642596)
chr1 (167-213)||(33721005-33721051)
chr1 (198-286)||(29124736-29124825)
chr1 (189-261)||(16552518-16552590)
[»] chr2 (19 HSPs)
chr2 (178-301)||(12133271-12133395)
chr2 (137-298)||(31579229-31579391)
chr2 (139-299)||(5394375-5394535)
chr2 (192-304)||(44732628-44732741)
chr2 (195-298)||(37568785-37568889)
chr2 (191-298)||(42745170-42745278)
chr2 (131-295)||(993736-993900)
chr2 (153-294)||(18105378-18105520)
chr2 (150-299)||(33756955-33757105)
chr2 (192-296)||(7157479-7157584)
chr2 (162-296)||(39401094-39401229)
chr2 (215-298)||(28365928-28366012)
chr2 (136-224)||(38743792-38743880)
chr2 (167-258)||(35476193-35476284)
chr2 (178-237)||(39314487-39314546)
chr2 (189-298)||(24359544-24359653)
chr2 (215-257)||(25988641-25988683)
chr2 (189-293)||(17627543-17627648)
chr2 (192-299)||(44752249-44752357)
[»] chr6 (16 HSPs)
chr6 (191-299)||(21910183-21910292)
chr6 (153-248)||(12836913-12837008)
chr6 (178-296)||(31107534-31107653)
chr6 (153-299)||(12411126-12411273)
chr6 (184-261)||(31489532-31489609)
chr6 (153-295)||(423637-423780)
chr6 (166-265)||(29185306-29185405)
chr6 (153-295)||(278374-278516)
chr6 (192-298)||(25084013-25084120)
chr6 (178-245)||(28099276-28099343)
chr6 (178-237)||(28933179-28933238)
chr6 (173-298)||(5944821-5944947)
chr6 (131-201)||(9536844-9536914)
chr6 (146-224)||(17177192-17177270)
chr6 (201-294)||(33792954-33793048)
chr6 (190-239)||(24448203-24448252)
[»] scaffold0182 (1 HSPs)
scaffold0182 (137-264)||(26345-26472)
[»] scaffold0020 (1 HSPs)
scaffold0020 (215-298)||(167834-167916)
[»] scaffold0009 (1 HSPs)
scaffold0009 (153-208)||(27241-27296)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 51853950 - 51853620
Alignment:
Q  19 actctttggctagagtttaatcatttatgtgcagcacagagagttaggtgaagctgagctacactcaccaacaactgacnnnnnnnnngtttgtttgttg 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||          |||||||||||    
T  51853950 actctttggctagagtttaatcatttatgtgcaacacagagagttaggtgaagctaagctacagtcaccaacaactgactttctcttt-tttgtttgttg 51853852  T
Q  119 taaacgaggtatc-tccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagct 217  Q
    | ||| ||||||| ||| |||||     |||| | |||||||| ||| ||||||||| |||||||||| | ||||| ||| |||||||||||| ||||||    
T  51853851 tgaacaaggtatcctccgagcgc-----cggagactaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagct 51853758  T
Q  218 gcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtatttttgtgttttattta 316  Q
    ||||||| ||||||||||||||||| ||||  ||| ||||| ||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  51853757 gcatgcccaaggctgaattcgaacc-agaactttggttaagttagaagagactcattctatctcatctaagcgctcttgggtatttttgtgttttattta 51853659  T
Q  317 agttaactaatgtgtaatctttcttaatctcttgccatt 355  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51853658 agttaactaatgtgtaatctttcttaatctcttgccatt 51853620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 295
Target Start/End: Complemental strand, 38766230 - 38766071
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| ||||||||||||| | |||||| ||| | ||||||||||||||||||||||  |||||||||| ||||||| |||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggatt 38766131  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttg 295  Q
    | ||||||| | |||| ||||||||||| |||| | || |||||||||||||||||||||    
T  38766130 caaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 153 - 298
Target Start/End: Complemental strand, 14854730 - 14854584
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| ||| |||||  || | |||||| ||| || |||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||    
T  14854730 taatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttg 14854631  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
     ||||||||||| ||| || || ||||||||||||||||||||||||    
T  14854630 gttaagctagaagagaaccgttccatctcatctaagcgctcttgggt 14854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 299
Target Start/End: Original strand, 31307066 - 31307229
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  31307066 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 31307165  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||| |||||||||||    
T  31307166 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggta 31307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 13686727 - 13686579
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccct-aagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatctt 251  Q
    ||||| || |||| |||||||| | |||||||||| ||||||||||| |||||||||||||  |||||| ||| |||| || |||||||||||| | |||    
T  13686727 taatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccaggacctt 13686628  T
Q  252 gattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    | |||||| |||| ||||||||  |||||||||||||||||||||||||    
T  13686627 ggttaagcaagaagagacccatgccatctcatctaagcgctcttgggta 13686579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 299
Target Start/End: Complemental strand, 35972483 - 35972321
Alignment:
Q  138 cgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 237  Q
    ||||||| |||| | |||||||| || ||| ||| || | |||||| ||| ||||||||||||| ||||||||||  |||| ||||| | ||||| ||||    
T  35972483 cgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattc 35972384  T
Q  238 gaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    |||||||  | |||| ||||||||||| || ||| || |||||||||||||||||||||||||    
T  35972383 gaacccaagaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgggta 35972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 45994661 - 45994500
Alignment:
Q  139 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 238  Q
    |||||| |||| | ||||| || ||||||||||||| | |||||| ||  |  |||||||||||||||||||||  | |||||||| ||||||| |||||    
T  45994661 gcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcg 45994562  T
Q  239 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    || |||| | |||| ||||||||||| |||||  || |||||||||||| ||||||||||||    
T  45994561 aatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgctcttgggta 45994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 13948608 - 13948698
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccc 243  Q
    |||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||   ||||||| || ||||||| ||||||||||    
T  13948608 taatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggctggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 35334098 - 35334264
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| ||| |||||| || | |||||| |||   |||||| ||||||||||||||   |||||||||| ||||||||||     
T  35334098 gcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaata 35334197  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatct-aagcgctcttgggtatt 301  Q
    |||||| |||| |||| ||||||||||| ||||   || |||||||||| |||||||||||| ||||    
T  35334198 cgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaagcgctcttggatatt 35334264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 7096221 - 7096077
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    ||||| |||||||||||| ||| | |||||| |||||| ||||||||||||||||||||   ||||||| |  ||| ||| |||| |||||| || ||||    
T  7096221 taatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttg 7096122  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgg 296  Q
     ||||||||||| | |||  | |||||||||||||||| ||||||    
T  7096121 gttaagctagaagaaacctgtgtcatctcatctaagcgttcttgg 7096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 46016296 - 46016182
Alignment:
Q  131 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggc 230  Q
    ||||| |||||||| |||| | |||| | | |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| |||||    
T  46016296 ctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggc 46016197  T
Q  231 tgaattcgaacccag 245  Q
    || ||||||||||||    
T  46016196 tggattcgaacccag 46016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 51626306 - 51626416
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | ||||| || ||||| |||| || | |||||||||| | ||||||||||| |||||||||   |||||||||| ||||||| |||    
T  51626306 gcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctggatt 51626405  T
Q  237 cgaacccagaa 247  Q
    ||||| |||||    
T  51626406 cgaactcagaa 51626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 9012411 - 9012303
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | || ||| ||| || |||||||||||||||| |||   |||||||||| ||||||  |||    
T  9012411 gcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctagatt 9012312  T
Q  237 cgaacccag 245  Q
    |||||||||    
T  9012311 cgaacccag 9012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 11140540 - 11140436
Alignment:
Q  195 tccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctct 293  Q
    |||||||||||||||| |  |||||||||| ||||||| ||||||| |||| | |||| ||||||||||| | | || | | |||| |||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaagatagccgtgttatcttatctaagcgctct 11140441  T
Q  294 tgggt 298  Q
    |||||    
T  11140440 tgggt 11140436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 17135185 - 17135133
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    ||||||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  17135185 aaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaac 17135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 22189443 - 22189547
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||| |||||||||||||| |  |||||||||  |||| || |||||||| | | | |||| ||||||||||| |||| ||| |||||||||||||| ||    
T  22189443 ctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagctagaagagactcatgtcatctcatctaagtgc 22189542  T
Q  291 tcttg 295  Q
    |||||    
T  22189543 tcttg 22189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 14042953 - 14042843
Alignment:
Q  154 aatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttga 253  Q
    ||||||||||||||||||  ||| |||||||||  |   |||||| |||||||| ||||  |||||||||| ||| ||  ||||||||||||||  |||     
T  14042953 aatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcggctgcatgcccaagacttgattcgaacccagaacgttgg 14042854  T
Q  254 ttaagctagaa 264  Q
    ||||| |||||    
T  14042853 ttaagttagaa 14042843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 25768765 - 25768815
Alignment:
Q  250 ttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    |||||||| |||||| |||||| || |||||||||||||||||||||||||    
T  25768765 ttgattaaactagaagagacccgttccatctcatctaagcgctcttgggta 25768815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 4710010 - 4710079
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggct-gaattcgaacccagaatcttgattaa 257  Q
    |||||||| |||||||||||||||  | ||||||||||| ||| || |||||||||| || |||||||||    
T  4710010 aaactctctctaagagttttaacgttgttgcatgcctaatgctagatttcgaacccaaaaccttgattaa 4710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 38844209 - 38844330
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 276  Q
    |||||| ||| | ||||| ||||||||||||||||  | |||||||| || |||| |||||||| ||  | |||| ||||||||||| |||| | || ||    
T  38844209 aaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttcca 38844308  T
Q  277 tctcatctaagcgctcttgggt 298  Q
    |||||| ||||| || ||||||    
T  38844309 tctcatttaagcacttttgggt 38844330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 29597570 - 29597510
Alignment:
Q  181 tggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    ||||| |||||||||| |||||||||||||||  | |||||||| ||| ||||||| ||||    
T  29597570 tggacagtaaactctctctaagagttttaacgttgttgcatgcccaagactgaatttgaac 29597510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 47023502 - 47023438
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacc 242  Q
    |||||||||  |||||||||||||||||||||||   | |||||||||||| ||| ||| |||||    
T  47023502 aaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaacc 47023438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 8839297 - 8839443
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| ||| |||||| |||| |||| | ||| | | ||||||||||||||||||||  |||||||||| ||||||| |||||||||||| | ||||    
T  8839297 taatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttg 8839396  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
     ||||||||||| |||||| |||||||||||||||||||||||||||    
T  8839397 gttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 8839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 13254117 - 13254264
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| || | |||||| ||| |  |||||||||||||||| ||||  |||||||||||||||||| |||||||| ||| | ||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
     ||||||||||| |||||| || |||||||||||||||||||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaagcgctcttgggta 13254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 29059946 - 29059784
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | ||||||||  ||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 29059847  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||| ||||||||||    
T  29059846 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 29059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 19477250 - 19477413
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | ||||||||  ||||||||| || | |||||| ||| || ||||||||||||||||||||   | |||||||| ||||||| |||    
T  19477250 gcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggatt 19477348  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 300  Q
    | ||||||||| |||| ||||||||||| |||||| || |||||||||||| |||||||||||||    
T  19477349 caaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctcttgggtat 19477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 28537476 - 28537368
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||||||||||||||||||||  | |||||||| ||||||| ||||||||||| || |||||||||| ||||| |||||| || ||||||||||||||||    
T  28537476 ctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgc 28537377  T
Q  291 tcttgggta 299  Q
    |||||||||    
T  28537376 tcttgggta 28537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 20207638 - 20207475
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||  |||| |||||  ||| || |||||| ||||||||||||||  | | ||||||||||||||||||    
T  20207638 gcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatgcctaaggctgaatt 20207539  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 300  Q
     ||||||| ||||||  ||||||||||| | | |||| |||||||||||||||||||||| ||||    
T  20207538 agaaccca-aatcttagttaagctagaagaaatccatatcatctcatctaagcgctcttgagtat 20207475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 283
Target Start/End: Complemental strand, 31492244 - 31492097
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 31492145  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatc 283  Q
    ||||||||| | |||| ||||||||||| |||||| || |||||||||    
T  31492144 cgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 298
Target Start/End: Complemental strand, 46373798 - 46373652
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    ||||| || |||||||||| || | |||| | ||| || ||||||||| |||||||||||| | || ||||| ||| ||| |||||||||||| ||||||    
T  46373798 taatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttg 46373699  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
     ||||||||||| ||||||   |||||||||||||| ||||||||||    
T  46373698 cttaagctagaagagacccgcgtcatctcatctaagagctcttgggt 46373652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 21747056 - 21747201
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| ||| |||||| || | ||||||  ||||  |||||||||||||||||||||  || |||||||||| |||| ||||| |||||| | ||||    
T  21747056 taatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcctaaagctggattcg-acccaggaccttg 21747154  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
     ||||| ||||| |||||| || |||||||||||| |||||||||||    
T  21747155 gttaagttagaagagacccgttccatctcatctaaacgctcttgggt 21747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 2657891 - 2657996
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||||| ||||||||||||||  |||||||||| ||||||| ||| |||| |||   |||||||||| ||||| |||| | || ||||||||||||||||    
T  2657891 ctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaagcgc 2657990  T
Q  291 tcttgg 296  Q
    ||||||    
T  2657991 tcttgg 2657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 24579506 - 24579610
Alignment:
Q  191 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 289  Q
    |||||||||||| |||||| | | ||||||||| ||| ||||||||||||| ||||| |||| |||| |||||| |||| ||| |||| |||||||| ||    
T  24579506 actctccctaagtgttttatcaatgctgcatgcgtaaagctgaattcgaactcagaaccttggttaaactagaagagactcatgtcatgtcatctaatcg 24579605  T
Q  290 ctctt 294  Q
    |||||    
T  24579606 ctctt 24579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 7265365 - 7265476
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    |||||||||||||||||||||||   |||||||||| ||| ||  || |||||||| ||  ||| ||||||||||| |||||| | ||||||||| |||     
T  7265365 aaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaagagacccgtgtcatctcatataaa 7265464  T
Q  288 cgctcttgggta 299  Q
    ||||||||||||    
T  7265465 cgctcttgggta 7265476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 299
Target Start/End: Original strand, 40099313 - 40099435
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 276  Q
    |||||| ||| || ||||||||||||||||||| |  |||||||  | || |||| |||||||  ||| |||||  ||||||||||| |||||| || ||    
T  40099313 aaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagacccgttcca 40099412  T
Q  277 tctcatctaagcgctcttgggta 299  Q
    ||||||||||||||||| |||||    
T  40099413 tctcatctaagcgctctcgggta 40099435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 28828781 - 28828892
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||| |||||| |||||||| | ||||||||| ||||||||| || ||||||||||||  ||| ||||  ||| | |||||||||||| | ||| ||     
T  28828781 taatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtttaaagttgaattcgaacctaaaatatta 28828880  T
Q  253 attaagctagaa 264  Q
     |||||||||||    
T  28828881 gttaagctagaa 28828892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 7190415 - 7190519
Alignment:
Q  193 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 291  Q
    ||||||||| |||||||||   |||||||||| || ||||||||| ||| || || |||| ||||||||||| |||   ||| |||||||||||| ||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgct 7190514  T
Q  292 cttgg 296  Q
    |||||    
T  7190515 cttgg 7190519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 4059740 - 4059802
Alignment:
Q  184 acggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccaga 246  Q
    |||| |||||||| |||||||||||||||| | |||||||  ||||||| |||||||| ||||    
T  4059740 acggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcaga 4059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 27484058 - 27484176
Alignment:
Q  146 cggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccag 245  Q
    |||| ||||||||||  ||||| |||||| | |||| || || || ||||||| |||||||||||||  |||||||||| | ||||| |||  ||| |||    
T  27484058 cggagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcag 27484157  T
Q  246 aatcttgattaagctagaa 264  Q
     | |||| |||||||||||    
T  27484158 gaccttggttaagctagaa 27484176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 32469974 - 32469908
Alignment:
Q  234 attcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    |||||||| || ||||||||||||||||||| |||| | || |||||||||||| |||| |||||||    
T  32469974 attcgaactcaaaatcttgattaagctagaagagactcgttccatctcatctaaacgcttttgggta 32469908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 40212042 - 40211936
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||||| ||||||||||||||||  | |||||||| ||| ||| ||| |||||||  | ||||||||||||| || | || ||| || || ||||||||    
T  40212042 aaactcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaagaaactcatgtcgtcacatctaag 40211943  T
Q  288 cgctctt 294  Q
    |||||||    
T  40211942 cgctctt 40211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 31717917 - 31717969
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    ||||||| ||||||||||||||||  |||||||| |||||| || ||||||||    
T  31717917 aaactcttcctaagagttttaacgttgctgcatgtctaaggttggattcgaac 31717969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 31113475 - 31113325
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| ||| |||||| |||| |||||| |||||  ||||||||||||||||||||   |||||||||| |||||||||||    
T  31113475 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 31113376  T
Q  237 cgaacccagaatcttgattaagct-agaaagacccatttcatctcatctaa 286  Q
    |||||| |||| ||| |||||||| | |||||||| |||||||||||||||    
T  31113375 cgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaa 31113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 153 - 298
Target Start/End: Complemental strand, 10592052 - 10591906
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| ||   |||||| ||| | |||||||||||||||||||||   |||||||||| ||||||| |||||||||||| | ||||    
T  10592052 taatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttg 10591953  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
     |||| |||||| |||||| || ||||||||||||| ||||||||||    
T  10591952 gttaatctagaagagacccgttccatctcatctaagtgctcttgggt 10591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 299
Target Start/End: Original strand, 30784986 - 30785149
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | ||||||||||| |||||||||| | ||||||| || | | ||||||||||||||||||||  |||||||| | || |||| |||    
T  30784986 gcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtccaaagctggatt 30785085  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||||  |  ||||||||||||||| |||| | || ||||||||||||  |||||||||||    
T  30785086 cgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctcttgggta 30785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 2798356 - 2798476
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcat 277  Q
    |||||| |||||| |||||||||| ||||||||||  |||||||||  |||| || |||||||||||||| |||| |||||||||||  | || ||||||    
T  2798356 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaagaaaccgtttcat 2798455  T
Q  278 ctcatctaagcgctcttgggt 298  Q
    |||||||||  ||||||||||    
T  2798456 ctcatctaactgctcttgggt 2798476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 18909317 - 18909457
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| |||  |||||  ||| ||| |||||||||||||||||||   ||||||| || ||||||| ||||||||| || | ||||    
T  18909317 taatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttg 18909416  T
Q  253 attaagctagaaagacccatttcatctcatctaagcgctcttg 295  Q
    ||||||||||||  |||| ||  ||||||||||||||||||||    
T  18909417 attaagctagaa--acccgttctatctcatctaagcgctcttg 18909457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 2804523 - 2804643
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcat 277  Q
    |||||| |||||| |||||||||| ||||||||||  |||||||||  |||| || ||||||||||| || |||| |||||||||||  | || ||||||    
T  2804523 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaagaaaccgtttcat 2804622  T
Q  278 ctcatctaagcgctcttgggt 298  Q
    |||||||||  ||||||||||    
T  2804623 ctcatctaactgctcttgggt 2804643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 5123498 - 5123598
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| |||||||||||    
T  5123498 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 5123597  T
Q  237 c 237  Q
    |    
T  5123598 c 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 28023526 - 28023606
Alignment:
Q  220 atgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||||||||| |||||||| ||| |  ||| ||||||||||| ||| || || |||||||||||||||||||||||||    
T  28023526 atgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaagcgctcttgggta 28023606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 36213020 - 36212963
Alignment:
Q  154 aatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaac 211  Q
    ||||||| |||||||||| || | |||||| ||| |||||||||||||||||||||||    
T  36213020 aatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaac 36212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 29553664 - 29553605
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacg 212  Q
    ||||| |||||||||| || || | |||||||||  ||||||||||||||||||||||||    
T  29553664 taatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaacg 29553605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 12682720 - 12682630
Alignment:
Q  193 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcat 282  Q
    |||||| |||||||||||||  | |||||||  ||||||| |||||||| |||||  ||| ||||||||||| |||| | |||||||||||    
T  12682720 tctcccgaagagttttaacgttgttgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcat 12682630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 48204311 - 48204473
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||||| |||||||||||||||||||  | | |||||||||  || ||||||||||| |||||||||  |||||||||| ||||||| |||    
T  48204311 gcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggatt 48204410  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||  | |||| ||||||||||| |||| | || |||||||||||||| |||||||||    
T  48204411 cgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcactcttgggt 48204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 139 - 298
Target Start/End: Complemental strand, 25224838 - 25224678
Alignment:
Q  139 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 238  Q
    |||||| |||| | ||||||||||||||||||| || | |||||| ||| ||  ||||| ||||||||||||||  ||||||| || ||  ||  |||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcg 25224739  T
Q  239 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||| | |||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  25224738 aacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 25224678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 30995965 - 30996127
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | | |||| ||| | ||||||||||||||||||||||  | |||||||| ||||  | |||    
T  30995965 gcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggatt 30996064  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||| | |||| ||||| ||||| |||||| || ||||||||||||||||||||||||    
T  30996065 cgaacccaggaccttggttaagatagaagagacccgttccatctcatctaagcgctcttgggt 30996127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 27763862 - 27763702
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| ||   |||||||||| | |||||||||||||||||||||   | || ||||| ||||||| |||    
T  27763862 gcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggatt 27763763  T
Q  237 cgaacccagaatcttgattaagctagaaagacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||| | |||| |||||||||  |||||| ||  |||||||||||||||||||||||    
T  27763762 cgaacccaggaccttggttaagctag-gagacccgttctatctcatctaagcgctcttgggt 27763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 38088720 - 38088612
Alignment:
Q  193 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 291  Q
    ||||||||||||||||||||   ||||||||| || |||| |||||||||  ||| |||| ||||||||||| |||||| ||||||||||||||||||||    
T  38088720 tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttcatctcatctaagcgct 38088621  T
Q  292 cttgggtat 300  Q
    |||||||||    
T  38088620 cttgggtat 38088612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 48210962 - 48211087
Alignment:
Q  139 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 238  Q
    |||||| |||| || ||| ||| ||| |||||| || | |||| ||||| || |||||| ||||||||||||||  |||||||||  ||||||| |||||    
T  48210962 gcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcg 48211061  T
Q  239 aacccagaatcttgattaagctagaa 264  Q
    |||| | || |||||||||| |||||    
T  48211062 aaccaaaaaccttgattaagttagaa 48211087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 14352658 - 14352529
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgc----ctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccat 272  Q
    |||||||||  || |||||| |||||||||||||   |||||||||    | ||||||| ||||||||| |  |||||| ||||||||||| ||||   |    
T  14352658 aaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgt 14352559  T
Q  273 ttcatctcatctaagcgctcttgggtattt 302  Q
    | ||||||||||||||||||||||||||||    
T  14352558 tccatctcatctaagcgctcttgggtattt 14352529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 21465972 - 21465860
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||||| ||| ||||||||||||  ||  | ||| ||||| || ||||||||||||||||||||| ||| ||||| | || | | ||||||||||||||    
T  21465972 aaactcttcctgagagttttaacgctgccacgtgcgtaaggatggattcgaacccagaatcttgatgaagttagaagaaacacgtgtcatctcatctaag 21465873  T
Q  288 cgctcttgggtat 300  Q
    || ||||||||||    
T  21465872 cgttcttgggtat 21465860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 1642747 - 1642673
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaac 211  Q
    |||||||| |||||| ||||||||  || |||||| || | |||||||||||| ||||||||||| |||||||||    
T  1642747 gcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaac 1642673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 22288320 - 22288216
Alignment:
Q  193 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 291  Q
    |||||||||||||||||||   | ||||||   |||||||||||||||| ||| |  ||| ||||| ||||| |||  ||| ||||||||||||||||||    
T  22288320 tctccctaagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctcatctaagcgct 22288221  T
Q  292 cttgg 296  Q
     ||||    
T  22288220 tttgg 22288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 55123222 - 55123134
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    |||||||| ||||||||||||| | ||||||   | || |||||||||||| ||||||||  |||||||  | ||||||| ||||||||    
T  55123222 taatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 137 - 299
Target Start/End: Complemental strand, 2744074 - 2743911
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||||||  |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  2744074 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggatt 2743975  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||||||||||  |||||||||||    
T  2743974 cgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctcttgggta 2743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 4125024 - 4125186
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||  |||    
T  4125024 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgatt 4125123  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||| |  ||| ||||||||||| |||||| || ||||||||||||| ||||||||||    
T  4125124 cgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 4125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 30936145 - 30935981
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| || ||||||  || | |||||| ||| |  |||||||||||||||||||||  ||||||||| |||||||| |||    
T  30936145 gcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggatt 30936046  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 300  Q
    ||||| ||| | |||| ||||| ||||| |||||| || ||||||||||||| ||||||||||||    
T  30936045 cgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctcttgggtat 30935981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 19715704 - 19715882
Alignment:
Q  117 tgtaaacgaggtat-ctccaagcgcaactccggaaattaatccctt-gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaa 214  Q
    ||||||| |||||| ||||  |||||||| |||| | ||||||| | |||||||||| || | |||||| ||| || |||||||| ||||||||||||      
T  19715704 tgtaaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgct 19715803  T
Q  215 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctag-aaagacccatttcatctcatctaagcgctc 292  Q
    |||||||||| ||||||| |||||||||||| | |||| ||||||||| ||||||   || ||||||||||||||||||    
T  19715804 gctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaagcgctc 19715882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 15683056 - 15682943
Alignment:
Q  151 attaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatct 250  Q
    |||||||||| |||||||||| || | |||||| ||| |  |||||||||||||||||||||  |||||||||| ||||||| |||||||| ||| | ||    
T  15683056 attaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggacct 15682957  T
Q  251 tgattaagctagaa 264  Q
    ||||||||||||||    
T  15682956 tgattaagctagaa 15682943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 13468745 - 13468895
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||| | |||||||||| ||   |||||| ||| | |||||| |||||||||||||||  ||| |||||| ||||||| |||    
T  13468745 gcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggatt 13468844  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaa 286  Q
    ||||||||| | |||| ||||||||||| |||||| || ||||| ||||||    
T  13468845 cgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 12958101 - 12958249
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| || | |||||| ||  |  |||||||||||||||||||||  |||||||||| || |||| |||| ||||||  | ||||    
T  12958101 taatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttg 12958200  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggtat 300  Q
     ||||||||||| ||||   || |||||||||||||| |||||||||||    
T  12958201 gttaagctagaagagactagttccatctcatctaagcactcttgggtat 12958249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 36994516 - 36994663
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||| ||||| || | |||||| | | ||||||||| ||||||||||||||  |||||||| | ||||||| |||||||||||| | ||||    
T  36994516 taatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttg 36994615  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
     |||| |||||| ||||   |  ||||| |||||||||||||||||||    
T  36994616 gttaaactagaagagacatgtgccatcttatctaagcgctcttgggta 36994663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 35207079 - 35206990
Alignment:
Q  199 taagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||||||||||||  |||||||| | |||| | |||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||    
T  35207079 taagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 30056017 - 30056128
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| ||||||||||  | | |||||||||| |  ||||||||||||||||||| |  |||||||||||||||||| ||| |||||||  | |||     
T  30056017 taatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttc 30056116  T
Q  253 attaagctagaa 264  Q
     |||||||||||    
T  30056117 gttaagctagaa 30056128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 8878144 - 8878201
Alignment:
Q  186 ggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccc 243  Q
    |||||||||| ||||||||||||||||  | ||||||||||| |||| ||||||||||    
T  8878144 ggtaaactcttcctaagagttttaacgttgttgcatgcctaaagctggattcgaaccc 8878201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 7839253 - 7839340
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 224  Q
    |||||||| |||| | |||||||| |||||||||| || | |||||| ||| |  ||||||||||||||||||| |  ||||||||||    
T  7839253 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatgcc 7839340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 28377758 - 28377695
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    |||| ||||| ||||||||||||||| |||||| |  ||||||||||||| |||| ||||||||    
T  28377758 aaatagacggcaaactctccctaagaattttaatgttgctgcatgcctaatgctggattcgaac 28377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 40900854 - 40900768
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa 265  Q
    |||||||||| |||  |||| ||||||||||||| | | || ||| ||||||| |||||||||||||  | |||||||||||||||||    
T  40900854 aaatggacggaaaaaactccttaagagttttaaccatgttgtatgtctaaggccgaattcgaacccatga-cttgattaagctagaaa 40900768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 4321559 - 4321664
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||||||||||||||||||||    |||||| ||||| ||| |||| ||||||||| |||  ||||||||||| | | | || ||||||||||||| | |    
T  4321559 ctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaaccc 4321658  T
Q  291 tcttgg 296  Q
    ||||||    
T  4321659 tcttgg 4321664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 16756223 - 16756061
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| |||||||||| || | ||||| |||  |  |||||||||||||||||||||   ||||||||| || ||||||||    
T  16756223 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaatt 16756124  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    | ||||||||| |||| ||||||||||| ||| || || ||||||||||||||||||||||||    
T  16756123 caaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgctcttgggt 16756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 296
Target Start/End: Complemental strand, 10841157 - 10840998
Alignment:
Q  139 gcaactccggaaattaatcccttgagcattgtgagatca-aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 237  Q
    |||||| |||||||||||||||  ||||||||| || |  ||||||  || ||  ||||||||||| ||||||||  | | |||||| |||||||||||     
T  10841157 gcaactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaattt 10841058  T
Q  238 gaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgg 296  Q
    ||||||| ||||||| ||||| ||||| |||||  |||||||||||||||||||||||||    
T  10841057 gaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgctcttgg 10840998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 25655280 - 25655391
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    ||||| ||| ||||||||| |||  |||||||||| |||||||| |||||||||||||||  |||||||||| || | | ||||||||||||||| ||||    
T  25655280 taatctctttagcattgtgtgatttaaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttg 25655379  T
Q  253 attaagctagaa 264  Q
    |||||| |||||    
T  25655380 attaagttagaa 25655391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 24801481 - 24801417
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacc 242  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  24801481 aaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaacc 24801417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 22022205 - 22022098
Alignment:
Q  193 tctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgct 291  Q
    |||||||||||||||||| |  |||||||||| ||||||| ||||||||||| || |||  ||||||||||| |||||  || |||||||||||| ||||    
T  22022205 tctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgct 22022106  T
Q  292 cttgggta 299  Q
    ||||||||    
T  22022105 cttgggta 22022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 42297420 - 42297517
Alignment:
Q  116 ttgtaaacgaggtatc-tccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacg 212  Q
    |||||||| ||||||| |||  |||||||| |||| | |||||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||    
T  42297420 ttgtaaactaggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacg 42297517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 32883622 - 32883697
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa 264  Q
    ||||||||||||||||||||||||  |||||||| | || |||| ||||||||||| ||||||| |||||||||||    
T  32883622 aaactctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaa 32883697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 299
Target Start/End: Complemental strand, 28724772 - 28724651
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 276  Q
    |||||||||| | ||||| |||||||||||||||   | ||||||   ||||||||||||||| |||| | ||| |||||||||||| |||| | || ||    
T  28724772 aaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatccagga-ctttattaagctagaagagactcgttcca 28724674  T
Q  277 tctcatctaagcgctcttgggta 299  Q
    |||||||||||||||||||||||    
T  28724673 tctcatctaagcgctcttgggta 28724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 9780992 - 9781093
Alignment:
Q  140 caactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcga 239  Q
    ||||| |||| | |||||||| |||||||||| || | |||||| |||   ||||||||||||||||||||||  |||||||||| ||||||| ||||||    
T  9780992 caactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcga 9781091  T
Q  240 ac 241  Q
    ||    
T  9781092 ac 9781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 17600561 - 17600661
Alignment:
Q  200 aagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    |||||||||||||| | |||||||  |||||||||||| ||||||  | |||| ||||||||||| |||||| | ||||||||||||| |||| ||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgcttttgggt 17600660  T
Q  299 a 299  Q
    |    
T  17600661 a 17600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 31733734 - 31733798
Alignment:
Q  180 atggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaaccca 244  Q
    |||||||  |||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  31733734 atggacgacaaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaaccca 31733798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 40019330 - 40019230
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    |||||||||| |||||||||||||  |||||||  | ||||||||||||||||||| || |||||||||| ||||| |||| | | |||| |||||||||    
T  40019330 aaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaag 40019231  T
Q  288 c 288  Q
    |    
T  40019230 c 40019230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 36982444 - 36982333
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||||||||||   | |||| |||| |||||| |||||  | |||||||||||||     
T  36982444 aaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaa 36982345  T
Q  288 cgctcttgggta 299  Q
    | ||||| ||||    
T  36982344 ctctcttaggta 36982333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 45806322 - 45806215
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||||||||||||||||||    |||||||||| ||| |||||||||||| ||| | |||| ||||| ||||| |||||| ||  |||||||||||||||    
T  45806322 ctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgc 45806223  T
Q  291 tcttgggt 298  Q
    || |||||    
T  45806222 tcctgggt 45806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 35539994 - 35540104
Alignment:
Q  151 attaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatct 250  Q
    |||||| ||||||| |||||||||   | |||||| ||||| |||| |||||||||||||||  | |||||||  ||||||||||||  || ||||| ||    
T  35539994 attaattccttgagtattgtgagactcatatggacagtaaattctctctaagagttttaacgttgttgcatgcacaaggctgaattcagactcagaacct 35540093  T
Q  251 tgattaagcta 261  Q
    |||||||||||    
T  35540094 tgattaagcta 35540104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7242807 - 7242912
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | |||||||| ||| ||| ||||||  ||||||  |||| ||||||||||||||||||||||  |||||||| | ||| ||| |||    
T  7242807 gcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaagactggatt 7242906  T
Q  237 cgaacc 242  Q
    ||||||    
T  7242907 cgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 46864216 - 46864104
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| || |||||||| | | |||||||||| ||  ||||||||||| ||||||||   ||||||||| || |||| ||| ||||||| ||  |||    
T  46864216 taatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaacccaaaactttg 46864117  T
Q  253 attaagctagaaa 265  Q
    |||||||||||||    
T  46864116 attaagctagaaa 46864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 35692574 - 35692467
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa-gacccatttcatctcatctaag 287  Q
    ||||||||||||||||||||||||  | |||||||| || | || |||||||| ||  |  ||| |||| ||||||| |||||||  |||||||||||||    
T  35692574 aaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagacccatgccatctcatctaag 35692475  T
Q  288 cgctcttg 295  Q
    ||||||||    
T  35692474 cgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 36522277 - 36522340
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaac 241  Q
    |||||||||| |||||||||||||||||||||||   |||||||| ||||| ||| ||||||||    
T  36522277 aaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaac 36522340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 12035675 - 12035585
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagag-ttttaacgaagctgcatgcctaaggctgaattcgaacc 242  Q
    |||||||| |||||||||| || | |||||| ||| | |||||||||||||| ||||||| | | |||||||| ||||||| |||||||||    
T  12035675 taatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 32534198 - 32534061
Alignment:
Q  162 gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 261  Q
    ||||||||||||| | || ||| |||||| ||||| |||||||||||||||  | |||||||  || |||||||| ||| ||| || |||| ||||||||    
T  32534198 gagcattgtgagacctaa-tgggcggtaagctctctctaagagttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagcta 32534100  T
Q  262 gaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||| | |||| | |||| |||||||| || |||||||||    
T  32534099 gaagaaacccgtgtcatatcatctaaacgatcttgggta 32534061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 18428158 - 18428265
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| |  |||| ||||| | | ||||||||||| |||||||||   |||||||||| |||| || ||||||| |||||| ||||    
T  18428158 taatccctcgagcattgtggggccaaa-tggacagcagactctccctaaaagttttaacactgctgcatgcccaaggttggattcgaatccagaaccttg 18428256  T
Q  253 attaagcta 261  Q
     ||||||||    
T  18428257 gttaagcta 18428265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 7624935 - 7624852
Alignment:
Q  217 tgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaagacccatttcatctcatctaagcgctcttgggtat 300  Q
    |||||| | ||||||| ||| ||||||| ||||||| |||||||||||||||   || |||||||| ||| |||||| ||||||    
T  7624935 tgcatgtccaaggctggatttgaacccataatcttggttaagctagaaagacttgttccatctcatttaaacgctctcgggtat 7624852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 36806736 - 36806649
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaa 240  Q
    |||||||| ||||||||||  | | |||||| ||| | || |||||||||||||||||||   ||| ||||| |||||||||||||||    
T  36806736 taatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatgcccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 15642596 - 15642526
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttt 207  Q
    |||||||| |||| | ||||| || |||||||||| || | |||||| ||| |||||||||||||||||||    
T  15642596 gcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 33721051 - 33721005
Alignment:
Q  167 ttgtgagatcaaaatggacggtaaactctccctaagagttttaacga 213  Q
    ||||| |||| |||||||||| |||||||||||||||| ||||||||    
T  33721051 ttgtgggatccaaatggacggcaaactctccctaagagatttaacga 33721005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 29124825 - 29124736
Alignment:
Q  198 ctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaa 286  Q
    |||||||||||||||  |||||||||| || |||| |||||||| ||  | | || ||||||||||| |||| | |||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaa 29124736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 16552590 - 16552518
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 261  Q
    |||||||  ||||||||||||||| ||||| ||| | || | |||||| ||| ||| ||||||||||||||||    
T  16552590 aaactctttctaagagttttaacgcagctgtatgtccaatgttgaatttgaatccataatcttgattaagcta 16552518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 301
Target Start/End: Original strand, 12133271 - 12133395
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 276  Q
    |||||||||| |  |||||||||||||||||||||  |||||||| | ||||||| |||||||||||  | |||||||||||||||| |||| | || ||    
T  12133271 aaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttcca 12133370  T
Q  277 tctcatctaagcgctcttgggtatt 301  Q
    |||||||||||||||||||||||||    
T  12133371 tctcatctaagcgctcttgggtatt 12133395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 31579229 - 31579391
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||||| |||| ||| |||||||||| ||   |||||| ||| | ||||||||||| |||||||||   | |||||||| ||||||| |||    
T  31579229 gcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggatt 31579328  T
Q  237 cgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    ||||||||  | |||||||||||||||| |||||| || ||||||||||||| ||||||||||    
T  31579329 cgaacccaagaccttgattaagctagaagagacccgttacatctcatctaagtgctcttgggt 31579391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 5394535 - 5394375
Alignment:
Q  139 gcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcg 238  Q
    |||||| |||| | |||||||  |||||||||| || | |||||| ||| |  |||||||||||||||||||| | |||||||||| ||||||| |||||    
T  5394535 gcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaac-atgctgcatgcccaaggctggattcg 5394437  T
Q  239 aacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||| | |||| ||||||||||| |||| | || |||||||||||||||||||| ||||    
T  5394436 aacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctttggta 5394375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 44732628 - 44732741
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    ||||||||||||||||||||   |||||||||| ||||||| |||||||||||| | |||| |||||||| || |||||| || ||||||||||||| ||    
T  44732628 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcatctaagtgc 44732727  T
Q  291 tcttgggtattttt 304  Q
    |||||||| |||||    
T  44732728 tcttgggtcttttt 44732741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 37568785 - 37568889
Alignment:
Q  195 tccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctct 293  Q
    |||||||||||||||||   |||||||||||||||||| |||||||||||| | |||| ||||||||||| | |||| || ||||||||||||| |||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctct 37568884  T
Q  294 tgggt 298  Q
    |||||    
T  37568885 tgggt 37568889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 42745170 - 42745278
Alignment:
Q  191 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 289  Q
    |||||||||||||||||||||   |||||||||| ||||||| |||||||||||  | |||| |||||||| || |||||| || |||||||||||||||    
T  42745170 actctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcg 42745269  T
Q  290 ctcttgggt 298  Q
    |||||||||    
T  42745270 ctcttgggt 42745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 993900 - 993736
Alignment:
Q  131 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggc 230  Q
    ||||| |||||||  |||||| |||||| || || |||||  || | |||||| ||| ||  ||||||||||||||||| ||  |||||||||| ||||     
T  993900 ctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcccaaggt 993802  T
Q  231 tgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttg 295  Q
    ||||||||||||||| | |||| |||||||| || |||| | | ||||||||||||||||||||||    
T  993801 tgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 18105378 - 18105520
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| ||| |||||||||   |||||| ||| |  |||||| ||||| ||||||||  | |||||||| ||||||| |||||||||||| | ||||    
T  18105378 taatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttg 18105477  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctctt 294  Q
     ||||||||||| |||| | || |||||||| |||||||||||    
T  18105478 gttaagctagaagagactcgttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 299
Target Start/End: Complemental strand, 33757105 - 33756955
Alignment:
Q  150 aattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatc 249  Q
    |||||||||||  ||||||||| |||  |||||  ||  || |||| ||||||||||||||||    || ||||  ||||||||||||||||  |||| |    
T  33757105 aattaatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaacc 33757006  T
Q  250 ttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
    ||||||||||||||| |||||| | |||||||||||||| | |||||||||    
T  33757005 ttgattaagctagaagagacccgtgtcatctcatctaagtgttcttgggta 33756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 7157584 - 7157479
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    |||||||||||||||||||||  |||||||||| ||||||  ||||||||| || |||||| ||||| ||||| |||| | ||  ||| |||||||||||    
T  7157584 ctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttctatcccatctaagcgc 7157485  T
Q  291 tcttgg 296  Q
    | ||||    
T  7157484 tattgg 7157479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 296
Target Start/End: Original strand, 39401094 - 39401229
Alignment:
Q  162 gagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagct- 260  Q
    |||||||||| || | |||||||||   | |||||||||| |||||||| ||  ||||||||| ||||||||||||||| |||  |||||| ||||| |     
T  39401094 gagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaatccaagatcttggttaagtta 39401193  T
Q  261 agaaagacccatttcatctcatctaagcgctcttgg 296  Q
    | |||||| | | ||||||||||||| || ||||||    
T  39401194 aaaaagactcgtgtcatctcatctaaacgttcttgg 39401229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 28366012 - 28365928
Alignment:
Q  215 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    |||||||||| ||||||| |||||||| ||  | |||| ||||| ||||| |||| | || ||||||||||||||||||||||||    
T  28366012 gctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggt 28365928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 38743880 - 38743792
Alignment:
Q  136 agcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 224  Q
    ||||||||| |||| | ||||||||  |||||||||||||| |||||  ||| || ||||||| || ||||||||||  ||||||||||    
T  38743880 agcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcc 38743792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 35476284 - 35476193
Alignment:
Q  167 ttgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaag 258  Q
    |||||||| | |||||||||  |||||||||| |||||||||||| | | |||||||| || ||| |||| |||| ||  ||||||||||||    
T  35476284 ttgtgagacccaaatggacgacaaactctcccgaagagttttaacaatgttgcatgcccaaagctaaatttgaactcaatatcttgattaag 35476193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 39314546 - 39314487
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 237  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||||||| ||  ||||||||    
T  39314546 aaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattc 39314487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 24359653 - 24359544
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||||||||||| |||||||| |  |||||||    ||||||| |||| |||| || | |||||||||| ||||| ||||  ||||||| |||||||||    
T  24359653 aaactctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagttagaagagact-atttcatatcatctaag 24359555  T
Q  288 cgctcttgggt 298  Q
    |||||||||||    
T  24359554 cgctcttgggt 24359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 25988683 - 25988641
Alignment:
Q  215 gctgcatgcctaaggctgaattcgaacccagaatcttgattaa 257  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  25988683 gctgtatgcccaaggctgaattcgaacccagaatcttggttaa 25988641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 17627648 - 17627543
Alignment:
Q  189 aaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaag 287  Q
    ||||| ||||||||| ||||||||  | |||||||| ||||||| |||||||| ||| | |||| ||||  ||||| |||| | | ||||||| ||||||    
T  17627648 aaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagacgcgtgtcatctcgtctaag 17627549  T
Q  288 cgctct 293  Q
    ||||||    
T  17627548 cgctct 17627543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 44752249 - 44752357
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    ||||||| |||||||||||||  | |||||||| ||| ||  ||||||||| || |  ||| ||||||||||| ||||   | |||||||||||||||||    
T  44752249 ctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagctagaagagacttgtatcatctcatctaagcgc 44752348  T
Q  291 tcttgggta 299  Q
     ||||||||    
T  44752349 acttgggta 44752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 21910292 - 21910183
Alignment:
Q  191 actctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcg 289  Q
    |||||| |||||||||||||||| | |||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||   ||||||||||||||| ||    
T  21910292 actctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacg 21910193  T
Q  290 ctcttgggta 299  Q
    ||||||||||    
T  21910192 ctcttgggta 21910183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 12836913 - 12837008
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaat 248  Q
    ||||||||  ||||||||| || | |||||| |||  | |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  12836913 taatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaacccagaat 12837008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 31107534 - 31107653
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttca 276  Q
    ||||||||||||| ||||||| |||||||||||||  | |||||| | || |||| |||||||| ||||| |||  ||||| ||||| ||||||||||||    
T  31107534 aaatggacggtaagctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttca 31107633  T
Q  277 tctcatctaagcgctcttgg 296  Q
    |||||||||| |||| ||||    
T  31107634 tctcatctaaacgctattgg 31107653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 12411273 - 12411126
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    ||||||||  ||||||||| ||   |||||| ||| | ||||| ||||||||||||||||  |||||||||| ||||||| |||||||| ||| | ||||    
T  12411273 taatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttg 12411174  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttgggta 299  Q
     ||||| ||||| |||||  || |||||||||||||| ||||| ||||    
T  12411173 gttaagttagaagagacctgttccatctcatctaagcactcttaggta 12411126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 31489609 - 31489532
Alignment:
Q  184 acggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagcta 261  Q
    |||| ||||||||||||| ||||||||||  ||||||| || || |||| |||| ||||||||| |||||||||||||    
T  31489609 acggaaaactctccctaaaagttttaacgttgctgcatacccaaagctgtattcaaacccagaaccttgattaagcta 31489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 423780 - 423637
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    |||||||| |||||||||| ||   |||||||||| |   | || |||||||||||||||  || ||||||| ||||||| |||| |||||| || ||||    
T  423780 taatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttg 423681  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttg 295  Q
     |||| |||||| ||| |  || |||||||||||||||||||||    
T  423680 gttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 29185405 - 29185306
Alignment:
Q  166 attgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaaa 265  Q
    ||||||||| | ||||||||| || | ||||||||||||||||||||  | |||||| |||| |||| ||||||||| |||| |||  |||| |||||||    
T  29185405 attgtgagacctaaatggacgatatattctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaaa 29185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 278516 - 278374
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttg 252  Q
    ||||||||||||  ||||| || | |||||||||| ||||||||| |||||||||||| |  | |||||||| || |||| |||| ||| ||  | |||     
T  278516 taatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagacctta 278418  T
Q  253 attaagctagaa-agacccatttcatctcatctaagcgctcttg 295  Q
     ||||||||||| |||| | | ||||||||||||| ||||||||    
T  278417 gttaagctagaagagactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 25084120 - 25084013
Alignment:
Q  192 ctctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgc 290  Q
    ||||||||||||||||||||   |||||||| | ||| |||||||||||| ||  |  ||||||||||||||| ||||   | |||||||||||||| |     
T  25084120 ctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgt 25084021  T
Q  291 tcttgggt 298  Q
    ||||||||    
T  25084020 tcttgggt 25084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 28099343 - 28099276
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccag 245  Q
    |||||||||  ||| ||||||||| |||||||||   |||||||||| ||||||| ||||||||||||    
T  28099343 aaatggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaacccag 28099276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 28933238 - 28933179
Alignment:
Q  178 aaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattc 237  Q
    |||||| ||| |||||||| |||||| ||||||||| | |||||| ||||||||||||||    
T  28933238 aaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 5944947 - 5944821
Alignment:
Q  173 gatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agaccca 271  Q
    |||| |||||| ||| ||||||||||||| ||||||||| | | | |||| | ||| |||||||||||| ||| | |||| ||||| || || ||||||     
T  5944947 gatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaagagacccg 5944848  T
Q  272 tttcatctcatctaagcgctcttgggt 298  Q
    | |||||| || ||||| |||||||||    
T  5944847 tatcatcttatataagcactcttgggt 5944821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 9536914 - 9536844
Alignment:
Q  131 ctccaagcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaa 201  Q
    |||| ||||||||| |||| | |||||||| ||||||||||  ||| ||||||||||||  ||||||||||    
T  9536914 ctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 17177270 - 17177192
Alignment:
Q  146 cggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcc 224  Q
    |||| |||||||||| ||| ||||||||||| |||| ||| | ||||| ||| |||||||||||| |  ||||||||||    
T  17177270 cggagattaatccctcgagtattgtgagatccaaatagacagaaaactttccttaagagttttaaagctgctgcatgcc 17177192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 33793048 - 33792954
Alignment:
Q  201 agagttttaacgaagctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctctt 294  Q
    ||||||||||||  | |||||||  ||||||||||| |||| ||| ||||||||||||||| || ||||   | ||||||||| |||||||||||    
T  33793048 agagttttaacgttgttgcatgcgcaaggctgaatttgaactcaggatcttgattaagctaaaagagacttttgtcatctcatttaagcgctctt 33792954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 24448203 - 24448252
Alignment:
Q  190 aactctccctaagagttttaacgaagctgcatgcctaaggctgaattcga 239  Q
    |||||||||||||| ||||||| | |||||||| ||||||||| ||||||    
T  24448203 aactctccctaagaattttaactatgctgcatgtctaaggctgcattcga 24448252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 26472 - 26345
Alignment:
Q  137 gcgcaactccggaaattaatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagttttaacgaagctgcatgcctaaggctgaatt 236  Q
    |||||||| |||| | ||||| || || ||||||| || | |||||| ||| |  ||||||||||||||||||||   |||||||||| ||||||| |||    
T  26472 gcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 26373  T
Q  237 cgaacccagaatcttgattaagctagaa 264  Q
    ||||||||| | |||| |||||||||||    
T  26372 cgaacccaggaccttggttaagctagaa 26345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 167916 - 167834
Alignment:
Q  215 gctgcatgcctaaggctgaattcgaacccagaatcttgattaagctagaa-agacccatttcatctcatctaagcgctcttgggt 298  Q
    |||||||||| ||||||| ||| ||||||   | |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  167916 gctgcatgcccaaggctggatttgaacccg--accttgattaagctagaagagacccgtttcatctcatctaagcgctcttgggt 167834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 27241 - 27296
Alignment:
Q  153 taatcccttgagcattgtgagatcaaaatggacggtaaactctccctaagagtttt 208  Q
    |||||||| |||||| |||||||| |||||| ||| || |||||||||||||||||    
T  27241 taatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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