View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_high_17 (Length: 257)
Name: NF13392_high_17
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 31860703 - 31860936
Alignment:
| Q |
9 |
acatcatcaccctccaaaggaaatattaaatacatcttaaaacattctaagacaagagtataagacaaggnnnnnnnnnnnnnnggtt-aaatgcaagag |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
31860703 |
acatcaacaccctccaaaggaaatattaaatacatcttaaaacattctaagacaagagtataagacaaggaaaaaaaaaaaaaaagtttaaatgcaagag |
31860802 |
T |
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| Q |
108 |
tgttttcaaccagtacattttgcaagcaaaaactataactcatatatagtttggtctcccctttctttacaattaattctaaacaatgtgagannnnnnn |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31860803 |
tgttttcaaccagtacattttgcaagcaaaaactataactcatatatagtttggtctcccctttctttacaattaattctaaacaatgtgagattttttt |
31860902 |
T |
|
| Q |
208 |
caacatgtatattttcaaacaacacatataactt |
241 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
31860903 |
caacatgtatattttcaatcaacacatataactt |
31860936 |
T |
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