View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_high_3 (Length: 485)
Name: NF13392_high_3
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 34466254 - 34466715
Alignment:
| Q |
15 |
tcacttaatcttagccctattgaaagtgtgcaatcttttcctcctataaaccctgtttcaccatctttttcttctgaatcttgttctcctatgccgatgg |
114 |
Q |
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| T |
34466254 |
tcacttaatcttagccctattgaaagtgtgcaatcttttcctcctataaaccctgtttcaccatctttttcttctgaatcttgttctcctatgccgatgg |
34466353 |
T |
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| Q |
115 |
aagattttggtttgaaatgggatggtaatgatactcaggtgagtaaaatggctcctcctgttccgccgccactgccgccgaggttatgggagactccggt |
214 |
Q |
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| T |
34466354 |
aagattttggtttgaaatgggatggtaatgatactcaggtgagtaaaatggctcctcctgttcccccgccgctgccgccgaggttatgggagactccggt |
34466453 |
T |
|
| Q |
215 |
ggtggtttctcaagatggtaatggtgatgttagtgttgagaatgaagaaaatttgaagccaaagttgaaggctttgcattgggataaagttaaggctagc |
314 |
Q |
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| T |
34466454 |
ggtggtttctcaagatggtaatggtgatgttagtgttgagaatgaagaaaatttaaagccaaagttgaaggctttgcattgggataaagttaaggctagc |
34466553 |
T |
|
| Q |
315 |
tcagatagggccatggtttgggatcaactgagaccaagttcttttcagtaagacacacttatgacttaactaacatcattaacatttgactttgtcttag |
414 |
Q |
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| T |
34466554 |
tcagatagggccatggtttgggatcaactgagaccaagttcttttcagtaagacacacttatgacttaactaacatcattaacatttgactttgtcttag |
34466653 |
T |
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| Q |
415 |
aaacaaaaaacttgtcattatcatagtatctttgttttattctattttatgtgaatgatgat |
476 |
Q |
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| T |
34466654 |
aaacaaaaaacttgtcattatcatagtatctttgttttattctattttatgtgaatgttgat |
34466715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 10326188 - 10326121
Alignment:
| Q |
273 |
ccaaagttgaaggctttgcattgggataaagttaaggctagctcagatagggccatggtttgggatca |
340 |
Q |
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|||||||||||| ||||||||||||||||||| | |||||| || ||| | | |||||||||||||| |
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| T |
10326188 |
ccaaagttgaagcctttgcattgggataaagtgagggctagttccgatcgtgaaatggtttgggatca |
10326121 |
T |
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