View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_1 (Length: 582)
Name: NF13392_low_1
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 75 - 569
Target Start/End: Complemental strand, 41275512 - 41275019
Alignment:
| Q |
75 |
ttgaatccaagaagccttgggttcgaggctgttagtgtctttggaggagataaatataaatatttttgtaagtgttttttgaaccaaaaggtcttcctta |
174 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
41275512 |
ttgaatccaagaagtcttgggttcgaggctgttagtgtctttggaggagataaatataaatatttttgtaagtgttctttgaaccaaaaggttttcctta |
41275413 |
T |
|
| Q |
175 |
ctttggatcgggacaccatccccacaccctaaatttaattctataaaaaatgaagataagcaattcttacacctaannnnnnnnaaaatcggtgaagata |
274 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
41275412 |
ctttggaccgggacaccatccccacaccctaaatttaattctataaaaaatgaagataagcaattcttacacctaattttttttaaa-tcggtgaagata |
41275314 |
T |
|
| Q |
275 |
tcgtgttcaattctaagttactcaaaagtcaatgtgaaatctcgacctcctcataacccaacacctcataataatattcatgctactactttataaggta |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41275313 |
tcgtgttcaattctaagttactcaaaagtcaatgtgaaatctcgacctcctcatgacccaacacctcataataatattcatgctactactttataaagta |
41275214 |
T |
|
| Q |
375 |
ttactcattcagtctcacattgtaaatcaatttgcaaaaacaattgtcctaaacataaatcgttttacaatactaatcaaacattaatttttaaatcata |
474 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41275213 |
ttactcattccgtctcacattgtaaatcaatttgcaaaaacaattgtcccaaacataaatcgttttacaatactaatcaaacattaatttttaaatcaaa |
41275114 |
T |
|
| Q |
475 |
tatttttctatctatggtggaacctctttccacatcctgtgtatgtgaaagttttgtacaccgaactgcccctatatatatttttctttctattc |
569 |
Q |
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| T |
41275113 |
tatttttctatctatggtggaacctctttccacatcctgtgtatgtgaaagttttgtacaccgaactgcccctatatatatttttctttctattc |
41275019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 5009523 - 5009456
Alignment:
| Q |
105 |
gttagtgtctttggag-gagataaatataaatatttttgtaagtgttttttgaaccaaaaggtcttcc |
171 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||| |||| |||||| | |||||||||| |
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| T |
5009523 |
gttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttcc |
5009456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 41910798 - 41910901
Alignment:
| Q |
53 |
tctagtggtaaaaagacatgtcttgaatccaagaagccttgggttcgaggctgttagtgtctttggaggagataaatataaatatttttgtaagtgtttt |
152 |
Q |
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|||||||||||||||||| |||||||||| ||| ||||||| ||| ||||||| |||||||||||| ||||| ||| || |||||||||||| | |
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| T |
41910798 |
tctagtggtaaaaagacaggtcttgaatctgagagaatttgggtttgagtttgttagtatctttggaggaggtaaatgtaattaactttgtaagtgttct |
41910897 |
T |
|
| Q |
153 |
ttga |
156 |
Q |
| |
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|||| |
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| T |
41910898 |
ttga |
41910901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 17064294 - 17064451
Alignment:
| Q |
52 |
gtctagtggtaaaaagacatgtcttgaatccaagaagccttgggttcgaggct-gttagtgtctttgga-ggagataaatataaatatttttgtaagtgt |
149 |
Q |
| |
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|||||||||||||| |||| ||||||||||| ||| | ||||||||| || | ||||| ||||||| |||| ||||| |||||| |||||||||| |
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| T |
17064294 |
gtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgc |
17064393 |
T |
|
| Q |
150 |
tttttgaaccaaaaggtcttccttactttggatcgggacaccatccccacaccctaaa |
207 |
Q |
| |
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| ||| | || |||||||||| | | ||||| ||| |||||||||| ||||||||| |
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| T |
17064394 |
tctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa |
17064451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 11403972 - 11404129
Alignment:
| Q |
52 |
gtctagtggtaaaaagacatgtcttgaatccaagaagccttgggttcgaggct-gttagtgtctttgga-ggagataaatataaatatttttgtaagtgt |
149 |
Q |
| |
|
|||||||||||||| |||| ||||||||| | ||| | |||||||||| || | ||||||||||||| |||| ||||| |||||| |||||||||| |
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| T |
11403972 |
gtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgc |
11404071 |
T |
|
| Q |
150 |
tttttgaaccaaaaggtcttccttactttggatcgggacaccatccccacaccctaaa |
207 |
Q |
| |
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| T |
11404072 |
tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa |
11404129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 51066464 - 51066621
Alignment:
| Q |
52 |
gtctagtggtaaaaagacatgtcttgaatccaagaagccttgggttcgag-gctgttagtgtctttgga-ggagataaatataaatatttttgtaagtgt |
149 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| || ||||||||| | | ||||| ||||||| |||| ||||||||| || |||||||||| |
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| T |
51066464 |
gtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgc |
51066563 |
T |
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| Q |
150 |
tttttgaaccaaaaggtcttccttactttggatcgggacaccatccccacaccctaaa |
207 |
Q |
| |
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| ||||| || |||||||||| | | ||||| ||| |||||||||| ||||||||| |
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| T |
51066564 |
tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa |
51066621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 38265398 - 38265241
Alignment:
| Q |
52 |
gtctagtggtaaaaagacatgtcttgaatccaagaagccttgggttcgag-gctgttagtgtctttgga-ggagataaatataaatatttttgtaagtgt |
149 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| | |||||||||| | | ||||| ||||||| |||| ||||| ||| || |||||||||| |
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| T |
38265398 |
gtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgc |
38265299 |
T |
|
| Q |
150 |
tttttgaaccaaaaggtcttccttactttggatcgggacaccatccccacaccctaaa |
207 |
Q |
| |
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| ||||| || |||||||||| | | ||||| ||| |||||||||| ||||||||| |
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|
| T |
38265298 |
tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa |
38265241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 33975544 - 33975581
Alignment:
| Q |
425 |
aaacataaatcgttttacaatactaatcaaacattaat |
462 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
33975544 |
aaacataaatcgttttacaatactaatgaaacattaat |
33975581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 42266638 - 42266674
Alignment:
| Q |
121 |
gagataaatataaatatttttgtaagtgttttttgaa |
157 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||| |
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| T |
42266638 |
gagataaatgtaaatatttttgtaagtgttctttgaa |
42266674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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