View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_10 (Length: 398)
Name: NF13392_low_10
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_10 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 6543570 - 6543944
Alignment:
| Q |
20 |
aacatatgtaaatcttattttcataaaacactctctagctttgaaccataagatgtgtgactttgtacattcaacatatatagcaataactcattccatg |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6543570 |
aacatatgtaaatcttattttcataaaacactctccagctttgaaccataagatgtgtgactttgtactttcaacatatatagcaataactcattccatg |
6543669 |
T |
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| Q |
120 |
tatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacattttttaccatagcatgtccatagttatttgggtgtccatcaggtct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
6543670 |
tatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacattttttaccattgcatgtccatagttattagggtgtccatcaggtct |
6543769 |
T |
|
| Q |
220 |
caacaacataatttcagttgtattaagcatcaaaaatttcaaacctttctttgatgcttcctcttgtgctactttaaattcattcacttgtgttaaatat |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6543770 |
caacaacataatttcagttgtatttagcatcaaaaatttcaaacctttctttgatgcttcctcttgtgctactttaaattcattcacttgtgttaaatat |
6543869 |
T |
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| Q |
320 |
gtctctagaatgaaaccatttaagttcatttcttccttgctaaatggttttgtcctaacacaattccctcctttg |
394 |
Q |
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| T |
6543870 |
gtctctagaatgtaaccatttaggttcatttcttccttgctaaatggttttttcctcacacaattccctcctttg |
6543944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 6554154 - 6554241
Alignment:
| Q |
89 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatttt |
176 |
Q |
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| T |
6554154 |
ttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaacaccaatgaacacaatcattatacaatgtcacatttt |
6554241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 15265210 - 15265265
Alignment:
| Q |
104 |
aataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
159 |
Q |
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| T |
15265210 |
aatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcatt |
15265265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 15256690 - 15256740
Alignment:
| Q |
109 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
159 |
Q |
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| T |
15256690 |
ctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcatt |
15256740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 15263065 - 15263015
Alignment:
| Q |
109 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
159 |
Q |
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| T |
15263065 |
ctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcatt |
15263015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 2240 - 2325
Alignment:
| Q |
89 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
174 |
Q |
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| T |
2240 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
2325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 6364181 - 6364266
Alignment:
| Q |
89 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
174 |
Q |
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|||||||||| || ||| || ||| ||||||| |||| ||||||||| || |||||||| ||||||||||| || ||||||||||| |
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| T |
6364181 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
6364266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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