View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_11 (Length: 391)
Name: NF13392_low_11
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 29448371 - 29448709
Alignment:
| Q |
7 |
acattaacatgaccctatcaaattaaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtct |
106 |
Q |
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| T |
29448371 |
acattaacatgaccctattaaattaaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtct |
29448470 |
T |
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| Q |
107 |
atgggccatcccaaattaaacatacattatgtgatgctgaggaagtggttgcattatactgtgtgtgctattagtttggtcaattttgatttagtttttg |
206 |
Q |
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| T |
29448471 |
atgggccatcccaaattaaacatacattatgtgatgctgaggaaatggttgcattatactgtgtgtgctattagtttggtcaattttgattttgtttttg |
29448570 |
T |
|
| Q |
207 |
tgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctagaatgaagcca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29448571 |
tgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctaatatgaagcca |
29448670 |
T |
|
| Q |
307 |
aatgaagttttaggattgtcatcagaaataggaatattt |
345 |
Q |
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| T |
29448671 |
aatgaagttttaggattgtcatcagaaatatgaatattt |
29448709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 30260201 - 30259887
Alignment:
| Q |
31 |
aaaaaactctaataataatattagagcaactttgacttgaaatttagattaatatgaccgatcaagccacatgtctatgggccatcccaaattaaacata |
130 |
Q |
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| T |
30260201 |
aaaaaactctaataataatattagagcaagtttgacttaagatttgggttaatatgaccgatcaagccacatgtctatgggccattccaaattaaacata |
30260102 |
T |
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| Q |
131 |
cattatgtgatgctgaggaagtggttgcattatactgtgtgtgctattagtttggtcaattttgatttagtttttgtgtagtgtagaagcctcctaattt |
230 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30260101 |
cattatgtgatgctgaggaaatggttgcattatactgcgtgtgctattagtttggtcaattttgatttagtttttgtgtagtgtagaagcctcctaattt |
30260002 |
T |
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| Q |
231 |
ggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctagaatgaagccaaatgaagttttaggattgtcatca |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30260001 |
ggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctaatatgaagccaaatgaagttttaggattgtcatca |
30259902 |
T |
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| Q |
331 |
gaaataggaatattt |
345 |
Q |
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|||||| |||||||| |
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| T |
30259901 |
gaaatatgaatattt |
30259887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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