View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13392_low_13 (Length: 364)
Name: NF13392_low_13
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_13 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 34439455 - 34439112
Alignment:
| Q |
6 |
catcatcaccacaaacaa-cccaacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaactcataaatgtgaaaaat |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34439455 |
catcatcaccacaaacaatcccaacaaatttttcagaaattcatcaacccaaaaaattaatcttttcaactcaattttaaaactcataaatgtgaaaaat |
34439356 |
T |
|
| Q |
105 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataaccagnnnnnnnttcttaaataatgacaaaaatcccaaattct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34439355 |
catttccaatttcttcatcttcaaacttagaaagtatatttctccaaatcaaacataaccagaaaaaaattcttaaataatgacaaaaatcccaaattct |
34439256 |
T |
|
| Q |
205 |
agagtgagggtggagtgtgctgctatcgtttcatgtcagaaagttgtttggaaattctattctcattatccattcctggaattccannnnnnncaaaaat |
304 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||||||||| | ||||||||||||| |||||||||| ||||||||| ||||||| ||||||| |
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|
| T |
34439255 |
aaagtgagggtggagtgtgctgttatcgtatcatgtcagaaggctgtttggaaattccattctcattacccattcctgcaattccatttttttcaaaaat |
34439156 |
T |
|
| Q |
305 |
aaaaagaggaccaaatcaattataagtctctagtatctcctttc |
348 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
34439155 |
aaaaagagggccaaatcaattatatgtctctagtatctcctttc |
34439112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 11243085 - 11243212
Alignment:
| Q |
39 |
agaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaactcataaatgtgaaaaatcatttccaatttcttcatcttcaaacttagaaag |
138 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
11243085 |
agaaattcatcaacccagaaaattaatcttttcacctccattttaaaactcataaatgtgaaaaatcatttccaatttcttcattttcaaactcagaaag |
11243184 |
T |
|
| Q |
139 |
tatatctctccaaatcaaacataaccag |
166 |
Q |
| |
|
|| ||||||| |||||||||| |||||| |
|
|
| T |
11243185 |
tacatctctcgaaatcaaacacaaccag |
11243212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 28655900 - 28656030
Alignment:
| Q |
6 |
catcatcaccacaaacaacc-caacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaac----tcataaatgtg-a |
99 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||| | || |||||| | |
|
|
| T |
28655900 |
catcatcaccacaaacaatctcagcaaatttttcagaaattcatcaa-cctaaaaattaatcttttcaactccattttaaaacccattaattaatgtgaa |
28655998 |
T |
|
| Q |
100 |
aaaatcatttccaatttcttcatcttcaaact |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28655999 |
aaaatcatttccaatttcttcatcttcaaact |
28656030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 19464940 - 19465285
Alignment:
| Q |
6 |
catcatcaccacaaacaa-cccaacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaactcataaatgtgaaaaat |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19464940 |
catcatcaccacaaacaatcccaacaaatttttcagaaattcatcaacccaaaaaattaatcttttcaactcaattttaaaactcataaatttgaaaaat |
19465039 |
T |
|
| Q |
105 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataaccag--nnnnnnnttcttaaataatgacaaaaatcccaaatt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
19465040 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataaccagaaaaaaaaaatcttaaataatgacaaaaatcccaaatt |
19465139 |
T |
|
| Q |
203 |
ctagagtgagggtggagtgtgctgctatcgtttcatgtcagaaagttgtttggaaattctattctcattatccattcctggaattccannnnnnncaaaa |
302 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| ||||||| ||||| |
|
|
| T |
19465140 |
ctaaagtgatggtggagtgtgctgctatcgtttcatgtcagaaggctgtttggaaattccattctcattactcattcctgcaattccatttttttcaaaa |
19465239 |
T |
|
| Q |
303 |
ataaaaagaggaccaaatcaattataagtctctagtatctcctttc |
348 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19465240 |
ctaaaaagaggaccaaatcaattatatgtctctagtatctcctttc |
19465285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 36511156 - 36510813
Alignment:
| Q |
6 |
catcatcaccacaaacaa-cccaacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaactcataaatgtgaaaaat |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36511156 |
catcatcaccacaaacaatcccaacaaatttttcagaaattcatcaacccaaaaaattaatcttttcaactcaattttaaaactcataaatttgaaaaat |
36511057 |
T |
|
| Q |
105 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataaccag-nnnnnnnttcttaaataatgacaaaaatcccaaattc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
36511056 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataagcagaaaaaaaattctt-aataatgacaaaaatcccaaattc |
36510958 |
T |
|
| Q |
204 |
tagagtgagggtggagtgtgctgctatcgtttcatgtcagaaagttgtttggaaattctattctcattatccattcctggaattccannnnnnncaaaaa |
303 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
36510957 |
taaagtgagggtggagtgtgctgctatcgtttcatgtcagaaggctgtttggaaattccattctcattacccattcctgcaattccatttttttcaaaaa |
36510858 |
T |
|
| Q |
304 |
taaaaagaggaccaaatcaattataagtctctagtatctcctttc |
348 |
Q |
| |
|
||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
36510857 |
taaaaagagcaccaaatcaattatatgtctttagtatctcctttc |
36510813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 42511445 - 42511100
Alignment:
| Q |
6 |
catcatcaccacaaacaa-cccaacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaactcataaatgtgaaaaat |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42511445 |
catcatcaccacaaacaatcccaacaaatttttcagaaattcatcaacccaaaaaattaatcttttcaactcaattttaaaactcataaatgtgaaaaat |
42511346 |
T |
|
| Q |
105 |
catttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataaccag-nnnnnnnttcttaaataatgacaaaaatcccaaattc |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
42511345 |
cttttccaatttcttcatcttcaaacttagaaagtatatctctccaaatcaaacataacgagaaaataaaatctaaaataatgacaaaaatcccaaattt |
42511246 |
T |
|
| Q |
204 |
tagagtgagggtggagtgtgctgctatcgtttcatgtcagaaagttgtttggaaattctattctcattatccattcctggaattcca-nnnnnnncaaaa |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
42511245 |
taaagtgagggtggagtgtgctgctatcgtttcatgtcaaaaggttgtttggaaattccattctcattacccattcctgcaattccattttttttcaaaa |
42511146 |
T |
|
| Q |
303 |
ataaaaagaggaccaaatcaattataagtctctagtatctcctttc |
348 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
42511145 |
ataaaaagaggaccaaatcaattatatgtctcaagtatctcctttc |
42511100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 31281320 - 31281450
Alignment:
| Q |
6 |
catcatcaccacaaacaacc-caacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaac----tcataaatgtg-a |
99 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||| | || |||||| | |
|
|
| T |
31281320 |
catcatcaccacaaacaatctcagcaaatttttcagaaattcatcaa-cctaaaaattaatcttttcaactccattttaaaacccattaattaatgtgaa |
31281418 |
T |
|
| Q |
100 |
aaaatcatttccaatttcttcatcttcaaact |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31281419 |
aaaatcatttccaatttcttcatcttcaaact |
31281450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 55425383 - 55425253
Alignment:
| Q |
6 |
catcatcaccacaaacaacc-caacaaatttttcagaaattcatcaacccaaaaaatttatcttttcaactcaattttaaaac----tcataaatgtg-a |
99 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||| | || |||||| | |
|
|
| T |
55425383 |
catcatcaccacaaacaatctcagcaaatttttcagaaattcatcaa-cctaaaaattaatcttttcaactccattttaaaacccattaattaatgtgaa |
55425285 |
T |
|
| Q |
100 |
aaaatcatttccaatttcttcatcttcaaact |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
55425284 |
aaaatcatttccaatttcttcatcttcaaact |
55425253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 18787678 - 18787716
Alignment:
| Q |
69 |
ttcaactcaattttaaaactcataaatgtgaaaaatcat |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
18787678 |
ttcaactcaattttaaaacccataaatgtgaataatcat |
18787716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 1572299 - 1572238
Alignment:
| Q |
69 |
ttcaactcaattttaaaactcataaatgtgaaaaatcatttccaatttcttcatcttcaaac |
130 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
1572299 |
ttcaactaaattttaaagcccataaatatgaaaaatcatctctcacttcttcatcttcaaac |
1572238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 34996352 - 34996314
Alignment:
| Q |
69 |
ttcaactcaattttaaaactcataaatgtgaaaaatcat |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
34996352 |
ttcaactcaattttaaaacccataaatgtgaataatcat |
34996314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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