View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13392_low_15 (Length: 340)

Name: NF13392_low_15
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13392_low_15
NF13392_low_15
[»] chr3 (19 HSPs)
chr3 (1-260)||(40480281-40480555)
chr3 (266-340)||(40846016-40846090)
chr3 (263-340)||(8950603-8950680)
chr3 (264-340)||(5391411-5391486)
chr3 (264-340)||(44995068-44995144)
chr3 (264-340)||(13856052-13856128)
chr3 (264-340)||(32352800-32352876)
chr3 (264-340)||(21853149-21853226)
chr3 (114-199)||(2229927-2230012)
chr3 (264-340)||(23467593-23467670)
chr3 (114-199)||(27033595-27033680)
chr3 (84-184)||(10474454-10474554)
chr3 (128-200)||(48084762-48084834)
chr3 (67-184)||(33632782-33632898)
chr3 (126-199)||(43720005-43720078)
chr3 (266-325)||(20382473-20382531)
chr3 (128-166)||(2310286-2310324)
chr3 (84-196)||(19830447-19830560)
chr3 (126-199)||(34373643-34373716)
[»] chr6 (20 HSPs)
chr6 (264-340)||(24694750-24694826)
chr6 (264-340)||(11084563-11084639)
chr6 (264-340)||(9231953-9232029)
chr6 (264-339)||(13627494-13627568)
chr6 (264-340)||(14309897-14309974)
chr6 (67-184)||(2800610-2800727)
chr6 (114-203)||(12412577-12412666)
chr6 (76-199)||(4804392-4804515)
chr6 (116-198)||(28696688-28696770)
chr6 (117-199)||(32737818-32737900)
chr6 (67-198)||(17828567-17828698)
chr6 (114-200)||(227610-227696)
chr6 (126-199)||(7162028-7162101)
chr6 (126-199)||(17944106-17944179)
chr6 (90-199)||(29698107-29698216)
chr6 (264-299)||(1728037-1728072)
chr6 (126-199)||(1249204-1249277)
chr6 (117-194)||(1518327-1518404)
chr6 (117-193)||(1516238-1516314)
chr6 (114-150)||(11180474-11180510)
[»] chr4 (29 HSPs)
chr4 (264-340)||(25954703-25954779)
chr4 (264-340)||(37801363-37801439)
chr4 (264-340)||(52632471-52632547)
chr4 (264-340)||(49284310-49284386)
chr4 (266-340)||(1535726-1535800)
chr4 (264-340)||(16338343-16338419)
chr4 (264-340)||(34240946-34241022)
chr4 (264-340)||(35018889-35018965)
chr4 (263-340)||(46583640-46583717)
chr4 (126-200)||(31862278-31862352)
chr4 (126-199)||(5763220-5763293)
chr4 (264-340)||(31377342-31377418)
chr4 (114-199)||(38079766-38079851)
chr4 (76-184)||(23474070-23474178)
chr4 (76-199)||(19901926-19902049)
chr4 (126-185)||(33262610-33262669)
chr4 (76-199)||(34778365-34778488)
chr4 (264-326)||(17888665-17888726)
chr4 (126-199)||(3952228-3952301)
chr4 (126-199)||(12153115-12153188)
chr4 (126-199)||(12241466-12241539)
chr4 (78-199)||(47922085-47922206)
chr4 (126-199)||(56558223-56558296)
chr4 (136-200)||(26428586-26428650)
chr4 (131-199)||(52018727-52018795)
chr4 (126-185)||(39862475-39862534)
chr4 (266-340)||(36012284-36012356)
chr4 (127-184)||(42844246-42844303)
chr4 (170-211)||(56564662-56564703)
[»] chr1 (22 HSPs)
chr1 (265-340)||(3346740-3346815)
chr1 (264-340)||(23908238-23908314)
chr1 (264-340)||(42517397-42517473)
chr1 (264-340)||(7742878-7742954)
chr1 (264-340)||(10156115-10156191)
chr1 (264-340)||(29149647-29149723)
chr1 (271-340)||(47022662-47022731)
chr1 (264-340)||(48392505-48392579)
chr1 (274-340)||(5974951-5975017)
chr1 (264-340)||(49902422-49902497)
chr1 (126-199)||(2845209-2845283)
chr1 (126-199)||(12380968-12381041)
chr1 (126-199)||(12385035-12385108)
chr1 (130-199)||(50484330-50484399)
chr1 (78-198)||(32887790-32887910)
chr1 (128-184)||(45970805-45970861)
chr1 (76-184)||(50294071-50294179)
chr1 (126-196)||(7841768-7841838)
chr1 (264-302)||(38859804-38859842)
chr1 (126-199)||(12151711-12151784)
chr1 (76-199)||(40328220-40328344)
chr1 (135-184)||(40988674-40988723)
[»] chr2 (17 HSPs)
chr2 (266-340)||(40277387-40277461)
chr2 (264-340)||(14186537-14186613)
chr2 (264-340)||(14942143-14942219)
chr2 (266-340)||(42769857-42769931)
chr2 (264-340)||(19181501-19181577)
chr2 (266-340)||(29846396-29846471)
chr2 (67-146)||(15709765-15709844)
chr2 (264-308)||(3956524-3956568)
chr2 (67-150)||(15722227-15722310)
chr2 (76-199)||(35316769-35316892)
chr2 (266-340)||(3597966-3598039)
chr2 (126-199)||(39465719-39465792)
chr2 (76-199)||(28564835-28564959)
chr2 (67-150)||(36929709-36929792)
chr2 (117-199)||(374487-374569)
chr2 (264-326)||(6318574-6318635)
chr2 (129-199)||(41983401-41983470)
[»] chr8 (16 HSPs)
chr8 (264-340)||(22324549-22324625)
chr8 (264-340)||(21525311-21525387)
chr8 (264-340)||(35806747-35806823)
chr8 (267-340)||(26021351-26021424)
chr8 (264-340)||(33934468-33934545)
chr8 (264-340)||(42013825-42013901)
chr8 (266-340)||(42072383-42072457)
chr8 (67-146)||(18689488-18689567)
chr8 (159-217)||(33709135-33709193)
chr8 (114-196)||(41511209-41511291)
chr8 (126-199)||(28318960-28319033)
chr8 (264-314)||(16523021-16523071)
chr8 (76-196)||(30426677-30426797)
chr8 (131-199)||(37966505-37966573)
chr8 (76-185)||(10672520-10672629)
chr8 (67-184)||(17520342-17520458)
[»] chr7 (22 HSPs)
chr7 (264-340)||(29556038-29556114)
chr7 (264-340)||(32876629-32876705)
chr7 (264-340)||(34707069-34707145)
chr7 (264-340)||(44164842-44164918)
chr7 (264-340)||(24320538-24320613)
chr7 (264-340)||(29238242-29238318)
chr7 (264-340)||(10576626-10576702)
chr7 (67-198)||(5463902-5464033)
chr7 (76-199)||(45260435-45260558)
chr7 (128-200)||(33450449-33450521)
chr7 (264-340)||(19334661-19334736)
chr7 (76-199)||(7362512-7362635)
chr7 (76-199)||(21151096-21151219)
chr7 (126-184)||(40019640-40019698)
chr7 (126-199)||(16366462-16366535)
chr7 (128-200)||(47500343-47500415)
chr7 (76-199)||(25084736-25084859)
chr7 (126-199)||(12139272-12139343)
chr7 (155-197)||(23311454-23311496)
chr7 (129-199)||(29630992-29631062)
chr7 (264-314)||(29981239-29981289)
chr7 (264-302)||(34259485-34259523)
[»] chr5 (24 HSPs)
chr5 (264-340)||(23218438-23218514)
chr5 (266-340)||(15631568-15631642)
chr5 (264-340)||(37169132-37169208)
chr5 (267-340)||(39862586-39862659)
chr5 (269-340)||(6257509-6257580)
chr5 (264-340)||(16618669-16618746)
chr5 (84-212)||(14688505-14688633)
chr5 (264-340)||(38397551-38397627)
chr5 (76-199)||(39902359-39902482)
chr5 (76-199)||(4895743-4895866)
chr5 (264-326)||(8457078-8457139)
chr5 (126-200)||(40753220-40753294)
chr5 (264-325)||(10081097-10081157)
chr5 (126-199)||(32129675-32129748)
chr5 (76-199)||(11775736-11775860)
chr5 (268-323)||(29491530-29491585)
chr5 (76-199)||(35660617-35660740)
chr5 (266-326)||(9738098-9738156)
chr5 (122-200)||(10173891-10173965)
chr5 (126-199)||(13032063-13032135)
chr5 (126-199)||(14349748-14349820)
chr5 (145-198)||(16500496-16500549)
chr5 (128-184)||(3057375-3057431)
chr5 (76-196)||(37266678-37266798)
[»] scaffold0079 (1 HSPs)
scaffold0079 (264-340)||(54441-54517)
[»] scaffold0062 (2 HSPs)
scaffold0062 (67-146)||(58677-58756)
scaffold0062 (67-150)||(70784-70867)
[»] scaffold0012 (1 HSPs)
scaffold0012 (76-199)||(208007-208130)
[»] scaffold0456 (1 HSPs)
scaffold0456 (126-203)||(13636-13713)
[»] scaffold0252 (1 HSPs)
scaffold0252 (126-198)||(10532-10604)
[»] scaffold0126 (1 HSPs)
scaffold0126 (74-198)||(22448-22572)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 40480281 - 40480555
Alignment:
Q  1 catcatcataaatcaaatcatatgtcagttgtaaaaataaggaaatttgcatagacatttaactgaaattcggaaagagataaacacataaaatagatag 100  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||| ||||||||||    
T  40480281 catcatcataaatcaaatcatatgtgagttataaaaataaggaaatttgcatagacatgtaaatgcaattgggaaagagataaacacatcaaatagatag 40480380  T
Q  101 cggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatgg----- 195  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||         
T  40480381 cggatcttaccgttaagtggattctaccatcattaattactttttattttctttaaatttttgtgtgtttttatctcttcaaattatagaaatggagaga 40480480  T
Q  196 ----------agaagatcttgactcacccaaattgacacaggaataaattaaatttttaactttgaggaggagca 260  Q
              |||||||||||||||||||||||| |||| |||||||||| |||||| ||| |||||||| ||||    
T  40480481 taataaatgaagaagatcttgactcacccaaattaacacgggaataaattgaattttaaaccttgaggagaagca 40480555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 40846090 - 40846016
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  40846090 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 40846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 8950680 - 8950603
Alignment:
Q  263 tagtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8950680 tagtggcggagccaggaatattgtaaagttcgggcaaaaaaaaatttgcaacatatttatagggcgtacataagaaat 8950603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 5391411 - 5391486
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  5391411 agtggcggagccaggaatattgtaaagcccgggcaaaaa-aaatttgcaacacatttatagggcgtacataagaaat 5391486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 44995144 - 44995068
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  44995144 agtggcggagccaggaatatagtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 44995068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 13856052 - 13856128
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||||  ||||||||||||||||||||||||    
T  13856052 agtggcggagccaggaatattgtaaagcccaggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 13856128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 32352800 - 32352876
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||||||||    
T  32352800 agtgacggagtcaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 32352876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 21853149 - 21853226
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggc-aaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||| | | ||||| ||| |||||||  ||||||||||||||||||||||||    
T  21853149 agtggcggagccaggaatattgtaaagcccagacaaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 21853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 2230012 - 2229927
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||| ||| ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||||||||||||| |||||| |||||    
T  2230012 taagtggtttccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaa 2229927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 23467670 - 23467593
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggc-aaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||| ||||  |||||   ||||||||  ||||||||||||||||||||||||    
T  23467670 agtggcggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacatttatagggcgtacataagaaat 23467593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 27033680 - 27033595
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||| | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  27033680 taagtggatcccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 27033595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 10474454 - 10474554
Alignment:
Q  84 acacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaa 183  Q
    ||||||||||||||||  |||||  ||  |||||||  ||| |||| |||||||||||||||| ||| || ||| |||||||||| | ||||||||||||    
T  10474454 acacataaaatagataatggatcctactattaagtgagttccaccaacattaattactttttagttttttgaaatttttgtgtgtctatatctctccaaa 10474553  T
Q  184 t 184  Q
    |    
T  10474554 t 10474554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 48084834 - 48084762
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||||||||||| |||||| ||| || ||| |||||||||| | |||||||||||||  ||||||||||||||    
T  48084834 catcattaattattttttatttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaag 48084762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 33632898 - 33632782
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgt 166  Q
    |||| ||| ||||||| ||||||||||||||||| |||||  ||  |||| ||||||| | ||||||||||||||||||| ||| |  |   |||| |||    
T  33632898 aatttggagagagatagacacataaaatagatagtggatcctactattaaatggattcca-catcattaattactttttagtttttcgatttttttttgt 33632800  T
Q  167 gtttttatctctccaaat 184  Q
    |||| |||||||||||||    
T  33632799 gtttatatctctccaaat 33632782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 43720005 - 43720078
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||| ||| |||||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  43720005 accatcattaattatattttattttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaa 43720078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 20382473 - 20382531
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagg 325  Q
    |||| ||||||||| |||||||||| ||||||||||| ||| |||||||| |||||||||    
T  20382473 tggcagagccaggattattgtaaagtccgggcaaaaa-aaaattgcaacgcatttatagg 20382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 2310324 - 2310286
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgt 166  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  2310324 catcattaattattttttactttctttaaaattttgtgt 2310286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 19830447 - 19830560
Alignment:
Q  84 acacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaac-ttttgtgtgtttttatctctccaa 182  Q
    ||||| ||||||||| | || ||  ||| |||||||| | | ||||||||||||||  |||||| || ||||||  |||| ||||| |||||||||||||    
T  19830447 acacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattatattttaccttttttaaagattttatgtgtctttatctctccaa 19830546  T
Q  183 attatagaaatgga 196  Q
    |||  |||||||||    
T  19830547 attgaagaaatgga 19830560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 34373643 - 34373716
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||| | ||||||||||||||||  ||||||||||||    
T  34373643 accatcattaattatattttacttttttcaagattttttgtctctttatctctccaaattgaagaaatggagaa 34373716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 24694826 - 24694750
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  24694826 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 24694750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 11084563 - 11084639
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  11084563 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 11084639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 9232029 - 9231953
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||| ||||||||||||    
T  9232029 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcatacataagaaat 9231953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 13627494 - 13627568
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaa 339  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||| |||||||||||||    
T  13627494 agtggcggagccaggaatattctaaagcccgggcaaaaa-aattttgcaacatatttataggacgtacataagaaa 13627568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 14309974 - 14309897
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaa-tttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||| | ||||||||||||||||| ||||||||| ||| ||||||||  ||||||||||||||||||||||||    
T  14309974 agtggcggaactaggaatattgtaaagcctgggcaaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 14309897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 2800610 - 2800727
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgt 166  Q
    |||| ||| ||||||| ||||||||||||||||| |||||  ||| |||||||| | | ||||||||| |||| |||||||||| || ||  |||| ||     
T  2800610 aatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattattttttacttttttcaattttttttga 2800709  T
Q  167 gtttttatctctccaaat 184  Q
    |||| |||||||||||||    
T  2800710 gtttatatctctccaaat 2800727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 12412666 - 12412577
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaagatc 203  Q
    ||||||| ||| ||||||||||||||  ||||||||| || ||| |||| ||| ||||||||||||||||||  ||||||||||| ||||    
T  12412666 taagtgggttccaccatcattaattatattttacttttttcaaaattttatgtatttttatctctccaaattgaagaaatggagaggatc 12412577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 4804515 - 4804392
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||    
T  4804515 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatc 4804416  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  4804415 tctccaaattgaagaaatggagaa 4804392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 28696688 - 28696770
Alignment:
Q  116 agtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggaga 198  Q
    ||||| ||| || ||||||||||| ||| | |||| | ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  28696688 agtgggttccacgatcattaattattttattctttttctaaacttttttgtgtctttatctctccaaatgatagaaatggaga 28696770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 32737900 - 32737818
Alignment:
Q  117 gtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    |||| ||| ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||||||||||||  ||||||||||||    
T  32737900 gtgggttccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 32737818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 17828567 - 17828698
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgt 166  Q
    |||| ||| ||||||| ||||||||||||||||| ||||   ||  |||||||||| | | ||||| |||||| |||||| ||| || ||| ||||||||    
T  17828567 aatttggagagagatagacacataaaatagatagtggattctactattaagtggatcccatcatcaataattaatttttagttttttgaaatttttgtgt 17828666  T
Q  167 gtttttatctctccaaattatagaaatggaga 198  Q
    || | |||| |||||||| |  ||||||||||    
T  17828667 gtctatatcactccaaatgaatgaaatggaga 17828698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 227610 - 227696
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    ||||||||| | | ||||||| |||| ||||||| || || |||  ||||||||| | |||||||||||||| ||||||||||||||    
T  227610 taagtggatcccatcatcattgattattttttacctttttcaaaactttgtgtgtctatatctctccaaattgtagaaatggagaag 227696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 7162101 - 7162028
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  7162101 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 7162028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 17944179 - 17944106
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| |  ||  |||| ||||||||||||||||||||||  ||||||||||||    
T  17944179 accatcattaattatattttactttttccaagattttatgtgtttttatctctccaaattgaagaaatggagaa 17944106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 29698216 - 29698107
Alignment:
Q  90 aaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatag 189  Q
    ||||||||| | |||||  ||| |||||||| | | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||| ||||||||||  ||    
T  29698216 aaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatttctccaaattgaag 29698117  T
Q  190 aaatggagaa 199  Q
    ||||||||||    
T  29698116 aaatggagaa 29698107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 1728072 - 1728037
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaa 299  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1728072 agtggcggagccaagaatattgtaaagcccgggcaa 1728037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 1249204 - 1249277
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||| ||||||||  ||||||||||||    
T  1249204 accatcattaattatattttacttttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaa 1249277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 1518327 - 1518404
Alignment:
Q  117 gtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatg 194  Q
    |||||| | ||||||||||||||  ||||||||| |||||| |||| ||||| ||||||| | ||||| | |||||||    
T  1518327 gtggatcccaccatcattaattatattttactttttttaaaattttatgtgtatttatcttttcaaatgaaagaaatg 1518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 1516238 - 1516314
Alignment:
Q  117 gtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaat 193  Q
    |||||| | ||||||||||||||  ||||||||| |||||| |||| ||||| ||||||| | ||||| | ||||||    
T  1516238 gtggatcccaccatcattaattatattttactttttttaaaattttatgtgtatttatcttttcaaatgaaagaaat 1516314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 11180474 - 11180510
Alignment:
Q  114 taagtggattctaccatcattaattactttttacttt 150  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  11180474 taagtggattccaccatcattaattattttttacttt 11180510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 25954703 - 25954779
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25954703 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 25954779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 37801439 - 37801363
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  37801439 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 37801363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 52632471 - 52632547
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  52632471 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 52632547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 49284310 - 49284386
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  49284310 agtggcggagccaggaatattgtaaaacccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 49284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 1535726 - 1535800
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  1535726 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaat 1535800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 16338419 - 16338343
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  16338419 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 16338343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 34240946 - 34241022
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| ||||  ||||||||||||||||||||||||    
T  34240946 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaattttacaacacatttatagggcgtacataagaaat 34241022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 35018889 - 35018965
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||| || |||||||||||||    
T  35018889 agtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttataaggtgtacataagaaat 35018965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 46583717 - 46583640
Alignment:
Q  263 tagtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||| ||||  ||||||| ||||||||||||||||    
T  46583717 tagtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttacaacacatttatatggcgtacataagaaat 46583640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 31862278 - 31862352
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||||||||||||| |||||||||| | |||| |||||||||| | |||||||||||||  ||||||| ||||||    
T  31862278 accatcattaattattttttactttttctaaaattttgtgtgtctatatctctccaaatggtagaaatagagaag 31862352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 5763220 - 5763293
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||||||||||||  ||||||||||||    
T  5763220 accatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 5763293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 31377342 - 31377418
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatag-ggcgtacataagaaat 340  Q
    |||||||||||||||| |||||||||||||||||||||| ||| |||||||  |||||||| ||  ||||||||||||    
T  31377342 agtggcggagccaggattattgtaaagcccgggcaaaaa-aaaattgcaacacatttatagcggtttacataagaaat 31377418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 38079766 - 38079851
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||| ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  | ||||||||||    
T  38079766 taagtggattccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaa 38079851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 23474178 - 23474070
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||||||||||||| | || ||  ||  || |||| || | ||||||||||||||||||||| ||| || ||  |||||||||||| ||||    
T  23474178 agagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaattactttttaattttttgaattttttgtgtgtttatatc 23474079  T
Q  176 tctccaaat 184  Q
    |||||||||    
T  23474078 tctccaaat 23474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 19901926 - 19902049
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||    
T  19901926 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatc 19902025  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  |||||| |||||    
T  19902026 tctccaaattgaagaaatagagaa 19902049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 33262610 - 33262669
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaatt 185  Q
    ||||||||||||||  ||||||||| |||||| |||| ||||| ||||||||||||||||    
T  33262610 accatcattaattatattttactttttttaaaattttatgtgtctttatctctccaaatt 33262669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 34778488 - 34778365
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | |||||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||    
T  34778488 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatc 34778389  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    |||||| |||  ||||||||||||    
T  34778388 tctccacattgaagaaatggagaa 34778365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 17888726 - 17888665
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttataggg 326  Q
    |||||||||||||||| |||||||||||| ||||||||||| | |||||||  ||||||||||    
T  17888726 agtggcggagccaggattattgtaaagccggggcaaaaatata-ttgcaacacatttataggg 17888665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 3952228 - 3952301
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  3952228 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 3952301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 12153188 - 12153115
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  12153188 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 12153115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 12241466 - 12241539
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  12241466 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 12241539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 47922085 - 47922206
Alignment:
Q  78 agataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctc 177  Q
    ||||||||||| ||||||||||| || ||| |||  ||||||| ||| ||||||||||| ||  ||||| ||| || ||  ||||  |||| ||||||||    
T  47922085 agataaacacaaaaaatagatagtgggtcttaccactaagtgggttccaccatcattaaatatattttatttttttcaatattttacgtgtctttatctc 47922184  T
Q  178 tccaaattatagaaatggagaa 199  Q
    || |||||  ||||||||||||    
T  47922185 tctaaattgaagaaatggagaa 47922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 56558296 - 56558223
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||||||||||||  |||||| |||||    
T  56558296 accatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaa 56558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 26428650 - 26428586
Alignment:
Q  136 attactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||| |||||||||| || |||  ||||||||| | |||||||||||||| ||||||||||||||    
T  26428650 attattttttacttttttcaaaaatttgtgtgtctatatctctccaaattgtagaaatggagaag 26428586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 52018795 - 52018727
Alignment:
Q  131 cattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    |||||||||  ||||||||| || ||  |||| ||||||||||||||||||||||  ||||||||||||    
T  52018795 cattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaa 52018727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 39862534 - 39862475
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaatt 185  Q
    ||||||||||||||  ||||||||| |||||  |||| ||||| ||||||||||||||||    
T  39862534 accatcattaattatattttactttttttaagattttatgtgtctttatctctccaaatt 39862475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 36012356 - 36012284
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||  ||||||| | | ||||||| ||||    
T  36012356 tggcggagc-aggaatattctaaagcccgggcaaaaa-aaatttgcaacacatttatatgacatacataaaaaat 36012284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 42844246 - 42844303
Alignment:
Q  127 ccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaat 184  Q
    ||||||||||||| |||||||||| ||||||||||| ||  | | |||||||||||||    
T  42844246 ccatcattaattattttttactttttttaaacttttttgaatctatatctctccaaat 42844303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 56564703 - 56564662
Alignment:
Q  170 tttatctctccaaattatagaaatggagaagatcttgactca 211  Q
    |||||||||||||||  |||||||||||| ||||||||||||    
T  56564703 tttatctctccaaatggtagaaatggagaggatcttgactca 56564662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 3346740 - 3346815
Alignment:
Q  265 gtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  3346740 gtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 3346815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 23908238 - 23908314
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  23908238 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 23908314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 42517473 - 42517397
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||    
T  42517473 agtggcggagccaggaatattgtaaagcccgtgcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 42517397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 7742954 - 7742878
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||  ||||||||||||||||||||||||    
T  7742954 agtggcggagccaggaatattgtaaagtccgagcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 7742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 10156191 - 10156115
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||    
T  10156191 agtggcggagccagaaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 10156115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 29149723 - 29149647
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||  || |||||||||||||||||||||    
T  29149723 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatgtatagggcgtacataagaaat 29149647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 47022662 - 47022731
Alignment:
Q  271 gagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  47022662 gagccagaaatattgtaaatcccgggcaaaaaaaaatttgcaacatatttatagggcgtacataagaaat 47022731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 48392579 - 48392505
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  48392579 agtggcggagccaggaatattgtaaagtccgggcaaaa--aaatttgcaacacatttatagggcgtacataagaaat 48392505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 5974951 - 5975017
Alignment:
Q  274 ccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||  |||||| ||||  ||||||||||||||||||||||||    
T  5974951 ccaggaatattgtaaagcccgggcaaaataaaatttacaacacatttatagggcgtacataagaaat 5975017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 49902422 - 49902497
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||| |||||||||||||||||  || |||||| |||||||||||  ||||||||||||||||||||||||    
T  49902422 agtggcggagtcaggaatattgtaaagcttggacaaaaa-aaatttgcaacacatttatagggcgtacataagaaat 49902497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 2845283 - 2845209
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaatt-atagaaatggagaa 199  Q
    ||||||||||||||  ||||||| | || ||| |||||||||| |||||||||||||||| |||||||| |||||    
T  2845283 accatcattaattatattttactattttcaaaattttgtgtgtatttatctctccaaattgatagaaatagagaa 2845209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 12380968 - 12381041
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  12380968 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 12381041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 12385035 - 12385108
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  12385035 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 12385108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 50484399 - 50484330
Alignment:
Q  130 tcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||| ||||||||||||    
T  50484399 tcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaa 50484330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 32887790 - 32887910
Alignment:
Q  78 agataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctc 177  Q
    ||||| |||||||||||| |||| |||||  ||| |||| ||| | | |||||||||||||| |||  | ||| || |||||||| || || | ||||||    
T  32887790 agatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattattttcaatttttttcaaacttttttgagtctatatctc 32887889  T
Q  178 tccaaattatagaaatggaga 198  Q
    ||||||| | |||||||||||    
T  32887890 tccaaatgaaagaaatggaga 32887910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 45970861 - 45970805
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaat 184  Q
    |||||||||||| |||||||||| || ||| |||||||||| ||||||||| |||||    
T  45970861 catcattaattattttttacttttttcaaaattttgtgtgtctttatctcttcaaat 45970805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 50294071 - 50294179
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||||| ||||||||||||||||  ||||| ||| || ||  |||| ||||| ||||||    
T  50294071 agagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccatcattaattatattttatttttttcaagattttatgtgtctttatc 50294170  T
Q  176 tctccaaat 184  Q
    |||||||||    
T  50294171 tctccaaat 50294179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 7841768 - 7841838
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatgga 196  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  |||||||||    
T  7841768 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatgga 7841838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 38859804 - 38859842
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaa 302  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  38859804 agtggcggagtcaggattattgtaaagcccgggcaaaaa 38859842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 12151784 - 12151711
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  | ||||||||||    
T  12151784 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaataaatggagaa 12151711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 40328344 - 40328220
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaac-ttttgtgtgt-tttta 173  Q
    ||||||| ||||| ||||||||| | || || ||||  ||||||| ||| |||||||||| |||  ||||||||| ||| ||  |||| ||||| |||||    
T  40328344 agagatagacaca-aaaatagatggtgggtcccaccactaagtgggttccaccatcattagttatattttactttttttcaagattttatgtgtctttta 40328246  T
Q  174 tctctccaaattatagaaatggagaa 199  Q
    ||||||||||||| ||||||| ||||    
T  40328245 tctctccaaattaaagaaatgaagaa 40328220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 40988723 - 40988674
Alignment:
Q  135 aattactttttactttctttaaacttttgtgtgtttttatctctccaaat 184  Q
    ||||| |||||||||| || ||| |||||||||| |||||||||||||||    
T  40988723 aattattttttacttttttcaaaattttgtgtgtctttatctctccaaat 40988674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 40277461 - 40277387
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  40277461 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 40277387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 14186613 - 14186537
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||||||||    
T  14186613 agtggcggagccaggaatattgtaaagctcgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 14186537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 14942219 - 14942143
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||    
T  14942219 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttataaggcgtacataagaaat 14942143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 42769931 - 42769857
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  42769931 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggcatacataagaaat 42769857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 19181501 - 19181577
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||| ||||||||||||    
T  19181501 agtggcggagccaggaatattgtaaagcccggacaaaaaaaaatttgcaacacatttatagggcatacataagaaat 19181577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 29846396 - 29846471
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggc-aaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||| || ||||| ||| |||||||  ||||||||||||||||||||||||    
T  29846396 tggcggagccaggaatattgtaaagcccgagcgaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 29846471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 15709844 - 15709765
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattacttttta 146  Q
    |||| ||| ||||||||||| ||||||||||||| |||||  ||| |||||||| ||| | |||||||||||||||||||    
T  15709844 aatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaattacttttta 15709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 3956524 - 3956568
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatt 308  Q
    |||||||||||||||| |||||||||||||||||||||| |||||    
T  3956524 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaatt 3956568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 15722310 - 15722227
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttacttt 150  Q
    |||| ||||||||||||||| |||||||||||||   |||  ||| |||| ||| ||| ||||||||||||| |||||||||||    
T  15722310 aatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaattcctttttacttt 15722227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 35316892 - 35316769
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | |||||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||  |||| | ||| ||||||    
T  35316892 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatatgtctttatc 35316793  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  35316792 tctccaaattgaagaaatggagaa 35316769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 3598039 - 3597966
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||| ||||||||||||  || ||||||| ||||||||||   ||||||||||||||| ||||||||    
T  3598039 tggcggagccagaaatattgtaaagttcgagcaaaaa-aaatttgcaatacatttatagggcgtacgtaagaaat 3597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 39465792 - 39465719
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||||||||||||||||||||  | ||||||||||    
T  39465792 accatcattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaaaaaatggagaa 39465719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 28564959 - 28564835
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaac-ttttgtgtgtttttat 174  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || |||  |||| ||||| |||||    
T  28564959 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttaaaagattttatgtgtctttat 28564860  T
Q  175 ctctccaaattatagaaatggagaa 199  Q
    |||||||||||  ||||||||||||    
T  28564859 ctctccaaattgaagaaatggagaa 28564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 36929792 - 36929709
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttacttt 150  Q
    |||| ||| ||||||| ||||||||||||| ||| |  ||  ||| |||| |||||||  ||||||||||||||||||||||||    
T  36929792 aatttggagagagatagacacataaaataggtagtgtgtcctaccattaaatggattccgccatcattaattactttttacttt 36929709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 374487 - 374569
Alignment:
Q  117 gtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    |||||| |||| |||||||||||  ||||||||| || ||  |||| |||||||||||||||| |||| | ||||| ||||||    
T  374487 gtggatcctacaatcattaattatattttacttttttcaagattttatgtgtttttatctctctaaatgaaagaaagggagaa 374569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 6318635 - 6318574
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttataggg 326  Q
    ||||||||||  |||| |||||||||||||||||||||| ||| |||||||  ||||||||||    
T  6318635 agtggcggagttaggattattgtaaagcccgggcaaaaa-aaaattgcaacacatttataggg 6318574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 41983401 - 41983470
Alignment:
Q  129 atcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    |||||||||||  ||||||||| ||| ||  ||| ||||| ||||||||||||||||| ||||||||||||    
T  41983401 atcattaattatattttacttt-tttcaagatttatgtgtctttatctctccaaattaaagaaatggagaa 41983470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 22324549 - 22324625
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  22324549 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 22324625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 21525311 - 21525387
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  21525311 agtggtggagccaggaatattgtaaagtccgggcaaaaacaaatttgcaacacatttatagggcgtacataagaaat 21525387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 35806747 - 35806823
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||||||  |||||||||| |||||||||||||    
T  35806747 agtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggtgtacataagaaat 35806823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 26021351 - 26021424
Alignment:
Q  267 ggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||| ||||||||||||||||| |||||||||  |||||||||||  ||||||||||||||||||||||||    
T  26021351 ggcggagtcaggaatattgtaaagctcgggcaaaacaaaatttgcaacacatttatagggcgtacataagaaat 26021424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 33934545 - 33934468
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaa-tttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||| |||||||||||||||| |||||||||| ||| ||||||||  ||||||||||||||||||||||||    
T  33934545 agtggcggagctaggaatattgtaaagctcgggcaaaaaaaaattttgcaacacatttatagggcgtacataagaaat 33934468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 42013825 - 42013901
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||||||||||||||||||||||    
T  42013825 agtggcggagcctgaaatattgtaaagcccgggcaaaaaaaaaatttcaacacatttatagggcgtacataagaaat 42013901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 42072383 - 42072457
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||  |  ||||||||||||    
T  42072383 tggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatattgtttacataagaaat 42072457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 18689567 - 18689488
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattacttttta 146  Q
    |||| ||| ||||||||||| ||||||||||||| |||||  ||| |||||||| ||| | |||||||||||||||||||    
T  18689567 aatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaattacttttta 18689488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 33709193 - 33709135
Alignment:
Q  159 ttttgtgtgtttttatctctccaaattatagaaatggagaagatcttgactcacccaaa 217  Q
    |||| ||||||||||||||||||||| | ||||||||||| |||||||||||| |||||    
T  33709193 ttttttgtgtttttatctctccaaatgaaagaaatggagaggatcttgactcatccaaa 33709135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 41511291 - 41511209
Alignment:
Q  114 taagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatgga 196  Q
    ||||||| ||| ||||||||||||||  ||||||||| || ||  |||| ||||||||||||||||||||||  |||||||||    
T  41511291 taagtggtttccaccatcattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaagaaatgga 41511209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 28318960 - 28319033
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| |||||| |||| ||||| ||| ||||||||||||  ||||||||||||    
T  28318960 accatcattaattatattttactttttttaaaattttatgtgtctttgtctctccaaattgaagaaatggagaa 28319033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 16523021 - 16523071
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaac 314  Q
    |||||||||||||| | |||||||||||||||| ||||| |||||||||||    
T  16523021 agtggcggagccagaattattgtaaagcccgggtaaaaaaaaatttgcaac 16523071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 30426677 - 30426797
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||    
T  30426677 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatc 30426776  T
Q  176 tctccaaattatagaaatgga 196  Q
    ||||||||||  |||||||||    
T  30426777 tctccaaattgaagaaatgga 30426797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 37966505 - 37966573
Alignment:
Q  131 cattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    |||||||||  ||||||||| |||||| |||| ||| | ||||||||||||||| | ||||||||||||    
T  37966505 cattaattatattttactttttttaaatttttatgtatctttatctctccaaataaaagaaatggagaa 37966573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 10672520 - 10672629
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | |||||  |||  ||||||  | | ||||||||||||||  ||||||  | |||||| |||| ||| ||||||||    
T  10672520 agagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattatattttaccctttttaaaattttatgtatttttatc 10672619  T
Q  176 tctccaaatt 185  Q
    ||||||||||    
T  10672620 tctccaaatt 10672629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 17520458 - 17520342
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgt 166  Q
    |||| ||| ||| ||| |||||||||||||||||||  ||  ||  |||||||| ||||||||| |||||||  |||| | ||| ||| || |||| |||    
T  17520458 aatttggagagatatagacacataaaatagatagcgagtcctactattaagtgggttctaccattattaattttttttgattttttttcaaatttt-tgt 17520360  T
Q  167 gtttttatctctccaaat 184  Q
    |||||||||||| |||||    
T  17520359 gtttttatctcttcaaat 17520342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 29556114 - 29556038
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||    
T  29556114 agtggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 29556038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 32876705 - 32876629
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||    
T  32876705 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagagcgtacataagaaat 32876629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 34707069 - 34707145
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  34707069 agtggcggagccaggaatattctaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 34707145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 44164918 - 44164842
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  44164918 agtggcggagccaggaatattctaaagtccgggcaaaaaaaaatttgcaacacatttatagggcgtacataagaaat 44164842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 24320613 - 24320538
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||    
T  24320613 agtggcggagtcaggaatattgtaaagcccgggcaaaaa-aattttgcaacacatttatagggcgtacataagaaat 24320538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 29238318 - 29238242
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  29238318 agtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttatagggcctacataagaaat 29238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 10576626 - 10576702
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||| ||||||||||||||||| |||  ||||| ||||||||||   ||||||||||||||||||||||||    
T  10576626 agtggcggagtcaggaatattgtaaagctcggataaaaaaaaatttgcaatacatttatagggcgtacataagaaat 10576702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 5463902 - 5464033
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgt 166  Q
    |||| ||| ||| ||||||||||||||||||||||| |||  ||  |||| || |||| |||| |||||||||||||||| ||| |  ||| ||||||||    
T  5463902 aatttggagagatataaacacataaaatagatagcgaatcctactattaaatgaattccaccaacattaattactttttagtttttcgaaatttttgtgt 5464001  T
Q  167 gtttttatctctccaaattatagaaatggaga 198  Q
    || | ||||||||||||| |  ||||||||||    
T  5464002 gtctatatctctccaaatgaatgaaatggaga 5464033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 45260435 - 45260558
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | |||||  |||  ||||||||| | | ||||||||||||  ||||||||| |||||  |||| ||||| ||||||    
T  45260435 agagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattatattttactttttttaagattttatgtgtctttatc 45260534  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  45260535 tctccaaattgaagaaatggagaa 45260558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 33450521 - 33450449
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||||||||||| |||||| ||| || ||| |||||||||||| |||||||||||||  ||||||||||||||    
T  33450521 catcattaattattttttatttttttcaaaattttgtgtgtttatatctctccaaatggtagaaatggagaag 33450449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 19334736 - 19334661
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||| |||||||||||||||||||||| ||  |||||||  ||||||||||  || |||||||||    
T  19334736 agtggcggagccaggactattgtaaagcccgggcaaaaa-aatattgcaacaaatttatagggtttatataagaaat 19334661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 7362635 - 7362512
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||| ||| ||| ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||    
T  7362635 agagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcattaattatattttacttttttcaagattttatgtgtctttatc 7362536  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  7362535 tctccaaattgaagaaatggagaa 7362512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 21151219 - 21151096
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| |||||  |||||||| | |||||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||    
T  21151219 agagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatc 21151120  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  21151119 tctccaaattgaagaaatggagaa 21151096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 40019698 - 40019640
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaat 184  Q
    |||||||||||||||||| |||||| || ||  |||| |||||||||||||||||||||    
T  40019698 accatcattaattactttatacttttttcaagattttttgtgtttttatctctccaaat 40019640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 16366535 - 16366462
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||  ||||  |||||||||||||||||||||  ||||||||||||    
T  16366535 accatcattaattatattttacttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaa 16366462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 47500343 - 47500415
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||||||||||| |||||| ||| || ||| |||||||||| | |||||||| ||||  ||||||||||||||    
T  47500343 catcattaattattttttatttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaag 47500415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 25084736 - 25084859
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||| ||| || ||| |||| ||||| ||||||    
T  25084736 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttttcaaaattttatgtgtctttatc 25084835  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||| ||||||| | ||||||||||    
T  25084836 tcttcaaattaaaaaaatggagaa 25084859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 12139343 - 12139272
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| |||||  |||| |||||||  |||||||||||||  ||||||||||||    
T  12139343 accatcattaattatattttactttttttaagattttatgtgttt--atctctccaaattgaagaaatggagaa 12139272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 23311496 - 23311454
Alignment:
Q  155 aaacttttgtgtgtttttatctctccaaattatagaaatggag 197  Q
    |||||||| ||||||||||||||||||||| | ||||||||||    
T  23311496 aaacttttttgtgtttttatctctccaaatgaaagaaatggag 23311454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 29631062 - 29630992
Alignment:
Q  129 atcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||| | |||||||| || ||| |||| ||||| ||||| ||||||||| | ||||||||||||    
T  29631062 atcattaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaatggagaa 29630992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 29981289 - 29981239
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaac 314  Q
    |||||||||||||| |||||||||||| || |||||||| || ||||||||    
T  29981289 agtggcggagccagaaatattgtaaagtccaggcaaaaaaaattttgcaac 29981239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 34259485 - 34259523
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaa 302  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  34259485 agtggcggagccaggaatattgtaaagcttgggcaaaaa 34259523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 23218438 - 23218514
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||    
T  23218438 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaatttgcaacacatttatagggagtacataagaaat 23218514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 15631568 - 15631642
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  15631568 tggcggagccaggaatattgtaaagcccaggcaaaaaaaaatttacaacgcatttatagggcgtacataagaaat 15631642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 37169208 - 37169132
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  37169208 agtggcagagccaggaatattgtaaagcccgggcaaaaaaaaatttgccacacatttatagggcgtacataagaaat 37169132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 39862659 - 39862586
Alignment:
Q  267 ggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||  |||| ||||||||| |||||||||    
T  39862659 ggcggagccaggaatattgtaaagcctgggcaaaaaaaaatttgcaacacatttttagggcgtatataagaaat 39862586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 6257580 - 6257509
Alignment:
Q  269 cggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||  |||||||||||||| |||||||||    
T  6257580 cggagccaggaatattgtaaagtccgggcaaaaaaaattttgcaacacatttatagggcgtatataagaaat 6257509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 16618746 - 16618669
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggca-aaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||| ||| |||||||||||||||||||| |||| ||| |||||||  ||||||||||||||||||||||||    
T  16618746 agtggcggagtcagaaatattgtaaagcccgggcaaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 16618669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 14688633 - 14688505
Alignment:
Q  84 acacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaa 183  Q
    ||||||||||||||||  ||||   ||| |||||||||||| ||||||||||  || |||| ||||| |||||| |||||| ||| ||||||||||||||    
T  14688633 acacataaaatagatattggattctaccattaagtggattccaccatcattagatatttttgactttttttaaatttttgtatgtctttatctctccaaa 14688534  T
Q  184 ttatagaaatggagaagatcttgactcac 212  Q
    |   |||||| |||| |||||| ||||||    
T  14688533 tggaagaaatagagatgatcttaactcac 14688505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 38397551 - 38397627
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    ||||||||||||||||||||| ||||||| |||||||||  || |||||||  ||||||||| ||||||||||||||    
T  38397551 agtggcggagccaggaatattataaagcctgggcaaaaaacaaattgcaacacatttataggacgtacataagaaat 38397627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 39902482 - 39902359
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    |||||||||||||  |||||||| | || ||  |||  ||| ||||||| ||||||||||||||  ||||||||| |||||  |||| ||||| ||||||    
T  39902482 agagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatcattaattatattttactttttttaagattttatgtgtctttatc 39902383  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  39902382 tctccaaattgaagaaatggagaa 39902359  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 4895743 - 4895866
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||    
T  4895743 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatc 4895842  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  4895843 tctccaaattgaagaaatggagaa 4895866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 8457139 - 8457078
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttataggg 326  Q
    ||||||||||||| || |||||||||||||||||||||| ||| ||||||| |||||||||||    
T  8457139 agtggcggagccaagattattgtaaagcccgggcaaaaa-aaaattgcaacatatttataggg 8457078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 40753220 - 40753294
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    ||||||||||||||  ||||||||| || ||  |||| |||| |||||||||||||||||| |||||||||||||    
T  40753220 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatggagaag 40753294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 10081097 - 10081157
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagg 325  Q
    |||||||||||||||| |||||||||||||||||||||| ||| |||||||  |||||||||    
T  10081097 agtggcggagccaggattattgtaaagcccgggcaaaaa-aaaattgcaacacatttatagg 10081157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 32129675 - 32129748
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| || ||| |||| ||||| ||||||||||||||||  ||||||||||||    
T  32129675 accatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaa 32129748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 11775860 - 11775736
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaac-ttttgtgtgtttttat 174  Q
    ||||||| ||||| ||||||||| | |||||  |||  ||||||| | | ||| ||||||||||  ||||||||| ||| ||  |||| |||||||||||    
T  11775860 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattatattttactttttttcaagattttatgtgtttttat 11775761  T
Q  175 ctctccaaattatagaaatggagaa 199  Q
    |||||||||||  ||||||||||||    
T  11775760 ctctccaaattgaagaaatggagaa 11775736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 29491585 - 29491530
Alignment:
Q  268 gcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttata 323  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||  |||||||    
T  29491585 gcggagccaggattattgtaaagcccgggcaaaaaaaaaattgcaacacatttata 29491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 35660617 - 35660740
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||    
T  35660617 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatc 35660716  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||| ||||||    
T  35660717 tctccaaattgaagaaacggagaa 35660740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 9738156 - 9738098
Alignment:
Q  266 tggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttataggg 326  Q
    |||||||||||||| ||||||||||||||| |||||  ||| ||||| || ||||||||||    
T  9738156 tggcggagccaggattattgtaaagcccggacaaaa--aaaattgcatcgcatttataggg 9738098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 10173965 - 10173891
Alignment:
Q  122 ttctaccatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaag 200  Q
    |||||||||||||||||| |||||||||| || ||| |    ||||| ||||||||||||||| |  ||||||||||||    
T  10173965 ttctaccatcattaattattttttacttttttcaaaat----tgtgtctttatctctccaaatgaaggaaatggagaag 10173891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 13032135 - 13032063
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||| ||| |||||  |||| ||||| ||||||||||||||||  ||||||||||||    
T  13032135 accatcattaattatattttatttt-tttaagattttatgtgtctttatctctccaaattgaagaaatggagaa 13032063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 14349820 - 14349748
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaa 199  Q
    ||||||||||||||  ||||||||| ||| ||  ||| ||||| ||||||| ||||||||| ||||||||||||    
T  14349820 accatcattaattatattttacttt-tttcaagatttatgtgtctttatctttccaaattaaagaaatggagaa 14349748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 16500549 - 16500496
Alignment:
Q  145 tactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggaga 198  Q
    |||||| || |||||||| |||||| |||||||||||||| | |||||||||||    
T  16500549 tacttttttcaaacttttttgtgttcttatctctccaaatgaaagaaatggaga 16500496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 3057431 - 3057375
Alignment:
Q  128 catcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaat 184  Q
    |||||||||||| ||| |||||| || |||||||| ||||| |||||||||| ||||    
T  3057431 catcattaattattttatacttttttcaaacttttttgtgtctttatctctcaaaat 3057375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 37266798 - 37266678
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||| ||||| ||||||||| | || ||  |||  ||||||| | | ||||||||||||||  ||||| ||| || ||  |||| ||||| ||||||    
T  37266798 agagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattatattttagttttttcaagattttatgtgtctttatc 37266699  T
Q  176 tctccaaattatagaaatgga 196  Q
    ||||||||||  |||||||||    
T  37266698 tctccaaattgaagaaatgga 37266678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 54441 - 54517
Alignment:
Q  264 agtggcggagccaggaatattgtaaagcccgggcaaaaataaatttgcaacgtatttatagggcgtacataagaaat 340  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  54441 agtggcggagccagaaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcgtacataagaaat 54517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 58756 - 58677
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattacttttta 146  Q
    |||| ||| ||||||||||| ||||||||||||| |||||  ||| |||||||| ||| | |||||||||||||||||||    
T  58756 aatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaattacttttta 58677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 70867 - 70784
Alignment:
Q  67 aattcggaaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttacttt 150  Q
    |||| ||||||||||||||| |||||||||||||   |||  ||| |||| ||| ||| ||||||||||||| |||||||||||    
T  70867 aatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaattcctttttacttt 70784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 208130 - 208007
Alignment:
Q  76 agagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgtttttatc 175  Q
    ||||||||||||| ||||||||| | || ||  |||  ||||||| | | | ||||||||||||  ||||||||| |||||  |||| ||||| ||||||    
T  208130 agagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattatattttactttttttaagattttatgtgtctttatc 208031  T
Q  176 tctccaaattatagaaatggagaa 199  Q
    ||||||||||  ||||||||||||    
T  208030 tctccaaattgaagaaatggagaa 208007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 13713 - 13636
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggagaagatc 203  Q
    ||||||||||||||  ||||||||| || ||  |||| ||||| ||||||||||||||||  ||||||||||| ||||    
T  13713 accatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaggatc 13636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 10532 - 10604
Alignment:
Q  126 accatcattaattactttttactttctttaaacttttgtgtgtttttatctctccaaattatagaaatggaga 198  Q
    |||||||||||| ||||| |||||| |||||  |||| ||| ||||||||||| ||||| | |||||||||||    
T  10532 accatcattaataactttatactttttttaagattttttgtatttttatctctacaaatgaaagaaatggaga 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 22448 - 22572
Alignment:
Q  74 aaagagataaacacataaaatagatagcggatctcaccgttaagtggattctaccatcattaattactttttactttctttaaacttttgtgtgttttta 173  Q
    ||||||||| ||||| ||||||||||| |||||  |||  ||||||  ||| || || ||||||||  ||||||||| || ||  |||| ||||| ||||    
T  22448 aaagagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaattatattttacttttttcaagattttatgtgtattta 22547  T
Q  174 tctctccaaattatagaaatggaga 198  Q
    |||||| ||||   |||||||||||    
T  22548 tctctctaaatgtaagaaatggaga 22572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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