View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13392_low_19 (Length: 306)
Name: NF13392_low_19
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 19063533 - 19063235
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtcatctctctatttctccaaaaatatgtgatattgctctctgcccaaacagtgatgtgccgctgcttgttgtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
19063533 |
accttactttgtgtttctctagaaataccatctctctatctctccaaaaatatgtgatattgctctctgcccaaagagtgatgtgccgctccttgttgtc |
19063434 |
T |
|
| Q |
101 |
aacgtgnnnnnnnnnnnnnnnnnnnnnnaatctcaagtgacctagttctctcctattttgatatcgggtcaacacaacaatattactatcattgaccaat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
19063433 |
aacgtgtttttctttccttcccttttt-aatctcaagtgacctagttctctcctattttgatatcgggtaaacacaacaatatcactatcattgaccaat |
19063335 |
T |
|
| Q |
201 |
aaaccaatcccacttgtatctacttctttatacaccctccaagagtttcttcacgtggccaatcaatgtacacaagtttcttggatttgcttcatctcac |
300 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
19063334 |
aaaccaagcccacttgtatctacatctttatacaccctccaagagtttcttcacgtggccaatctatgtacttaagtttcttggatttgcttcatttcac |
19063235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 1274478 - 1274307
Alignment:
| Q |
129 |
aatctcaagtgacctagttctctcctattttgatatcgggtcaacacaacaatattactatcattgaccaataaaccaatcccacttgtatctacttctt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1274478 |
aatctcaagtgacctagttctctcctattttgatatcgggtcaacacaacaatattactatcattgaccaataaaccaagcccacttgtatctacttctt |
1274379 |
T |
|
| Q |
229 |
tatacaccctccaagagtttcttcacgtggccaatcaatgtacacaagtttcttggatttgcttcatctcac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1274378 |
tatacaccctccaagagtttcttcacgtggccaatcaatgtacacaagtttcttggatttgcttcatttcac |
1274307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1274607 - 1274508
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtcatctctctatttctccaaaaatatgtgatattgctctctgccc-aaacagtgatgtgccgctgcttgttgt |
99 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
1274607 |
accttactttgtgtttctctagaaatgccatctctctatctctccaaaaatatgtgatattgctctctgcccaaaatagtgatgtgccgctccttgttgt |
1274508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34913468 - 34913410
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtcatctctctatttctccaaaaatatgtgata |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34913468 |
accttgctttgtgtttctctagaaatgtcatctctctatctctccaaaaatatgtgata |
34913410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 6856437 - 6856341
Alignment:
| Q |
167 |
ggtcaacacaacaa--tattactatc-attgaccaataaaccaatcccacttgtatctacttctttatacaccctccaagagtttcttcacgtggccaat |
263 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||| ||||| ||||||| | ||||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
6856437 |
ggtcaacacatcaaagtattactatccattgaccaatacaccaaacccacttatgtctactt---tatacaccctccaaaagtttcttcatgtggccaat |
6856341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 13106938 - 13107064
Alignment:
| Q |
164 |
tcgggtcaacacaacaatattactatc-attgaccaa-taaaccaatcccacttgtatctacttctttatacaccctccaagagtttcttcacgtggcca |
261 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||||||| |||||||| ||||||||| ||| || |||||||||||||||| ||| ||||||| |||| |
|
|
| T |
13106938 |
tcgggtcaacaccacattgttactatccattgaccaaataaaccaagcccacttgtgtctgtttgtttatacaccctccaaaagtgccttcacgctgcca |
13107037 |
T |
|
| Q |
262 |
atcaatgtacacaagtttcttggattt |
288 |
Q |
| |
|
|| || || |||||||| |||||||| |
|
|
| T |
13107038 |
attcatatagacaagtttattggattt |
13107064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 14270691 - 14270610
Alignment:
| Q |
1 |
accttgctttgtgtttctct--agaaatgtcatctctctatttctccaaaaatatgtgatattgctctctgcccaaacagtgatgtgccgct |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
14270691 |
accttgctttgtgtttctctctagaaatgtcatctctc--------caaaaat--gtgatattgctccctccccaaacagtgatgtgccgct |
14270610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 30046106 - 30046052
Alignment:
| Q |
164 |
tcgggtcaacacaacaatattactatcattgaccaataaaccaatcccacttgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30046106 |
tcgggtcaacacaacaatattactatcattgaccaataaaccaaacccacttgta |
30046052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22243387 - 22243423
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtcatctctct |
37 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22243387 |
accttgttttgtgtttctctagaaatgtcatctctct |
22243423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32226852 - 32226823
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtca |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32226852 |
accttgctttgtgtttctctagaaatgtca |
32226823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 8996404 - 8996433
Alignment:
| Q |
1 |
accttgctttgtgtttctctagaaatgtca |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8996404 |
accttgctttgtgtttctctagaaatgtca |
8996433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University