View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_2 (Length: 523)
Name: NF13392_low_2
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 3569326 - 3569669
Alignment:
| Q |
5 |
atgtccctgtaaactattgtttaggtaattttttcttcatatctttctctttgattttcttgcttataatggtcatgaaatatacatgacaacaacacaa |
104 |
Q |
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| T |
3569326 |
atgtccctgtaaactattgtttaggtaattttttcttcatatctttctctttgattttcttgcttttaatggtcatgaaatatacatgacaacaacacaa |
3569425 |
T |
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| Q |
105 |
acatattgtaatttttaatggaaataaaacnnnnnnnnncatctcaagttgtgttgtgtgactgatacattnnnnnnntcagatgctcattaacaatact |
204 |
Q |
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| T |
3569426 |
acatattgtaatttttaatggaaataaaacattttttttcatctcaagttgtgttgtgtgactgatacattaaaaaaatcagatgctcattaacaatact |
3569525 |
T |
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| Q |
205 |
tgtccaaactcattggtagagttcgctagaagacaagctaatgtagtggtccataatttggctgagtgactacatatacagctaatcctcaagtttttga |
304 |
Q |
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| T |
3569526 |
tgtccaaactcattggtagagttcgctagaagacaagctaatgtagtggtccataatttggctgagtgactacatatacagctaatcctcaagtttttga |
3569625 |
T |
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| Q |
305 |
tgctgttccacattgttttcatgatattatccttaatgaaatga |
348 |
Q |
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| T |
3569626 |
tgttgttccacattgttttcatgatattatccttaatgaaatga |
3569669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 405 - 506
Target Start/End: Original strand, 3569710 - 3569811
Alignment:
| Q |
405 |
ggattcatcttgactgtggatgtatctgattcttcaaaagatccatgcaaggatctgaaacatttaatagttgcctgaaattattgacaaaacatttcct |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
3569710 |
ggattcatcttgactgtggatgtatctgattcttcaaaagatccatgcaaggatctgaaacatttaatagttgcttgaaattattgacaaaacattttct |
3569809 |
T |
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| Q |
505 |
tt |
506 |
Q |
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|| |
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| T |
3569810 |
tt |
3569811 |
T |
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Back To:
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